Results for 1yptb-1-AUTO.1


1yptb-1-AUTO.1    : YGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRADLNANYIQVGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQGRPLLNS : GGU38349
GGU38349          : HGFSEDFEEVQRCTADMNITAEPDNKHKNRYINILYDHSRVK.LRPLPGKDSKSDYIANYVSGKAKAYIATQGPLKSTFEDFWRMIWAQHTGIIVMITNLVEKGRRKCDWPTENSEEYTLKSTNIHACYTVRPLHGQEHKDEKGSERKPKGRQNERTVIQYHYTQWPDMGVPEYALTFVRRSSAARTHMGPVVVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQEEQYIFIHDALLEAILGKEGGKTRLEKQFKLVVECFSAQKDCNRNS : STU63293
STU63293          : WVDKASTHELTQAVKLKNVTAEEAGAPMPQTMSGPLGLARFASIPINQQTQVKSDGMVNTLTFGKPVALAGSYPKNTALEAHMKMLLEKECSCLVVLTS..EDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGE..AIDQYNMQLSC.GEKRYTIPVLHVKNWPDHQPLPS..TDQLEYLADRVKNSNQNG..APGRSSS.D..KHLPMIHCLGGVGRTGTMAAALVLKD..NPHSNLEQVRADFRDSRNNRMLEDASQF...VQLKAMQAQLLMTT : YOPH_YERPS
YOPH_YERPS        : YGPEARAELSSRLTTLRNTLAPRTNDPRYLQACGGEKLNRFRDIQCCRQTAVRADLNANYIQVGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVGDDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQGRPLLNS : C54689
C54689            : RNLYAYIQKLTQIETVTGMELEASSKAHTSRFISALPCNKFKSGRVCLQPIRGSDYIASFLDGQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHWPAERSARYQYFVVDPMAEYNMPQYILR.......EFKVTDARDQSRTVRQFQFTDWPEQGVPKS..GEGFIDFIGQVKTKEQFG..QDG..........PISVHCSAGVGRTGVFITLSIVLERYEGVVDIFQTVKMLRTQRPMVQTEDQYQFCYRAALEYLGSFDHYAT : CELB020710
CELB020710        : KKKKEIINAWIRHVLLKKEYQDNGGSIRSAQVFVAPTRNRYTNIPCCDATRVKIDDDANIVSSKYRRIICAQAPLKGTIEEFWRMILSSGVEYIVMLCEIIELGKEKSAFPSKLGQAMRIGKFCNIT.KVQHDDIDK..VISMSLLRITREGQEPVFVKHVHWHNWPDHGVPESYMSPLHLLNIFRSHQKPILIHCSAGVGRTGTLALILIALQTLRSVDFSGIRPLFTRLREEEMQYLFVHRCVLEYLVQKKNVNRDDYTKFLKEYKVAEKISSGYLDT : PTP3_DICDI
PTP3_DICDI        : KKSHKHHQRHYSHNDLDNRKHDKFFSALQPNNYGKRYHDVLPSTRVRLTPIESGDYIANYINGSYRYYIACQAPLPSTIKDFWRMVWEERSSVIVCLTKLEENGKKKADYPETSQAQEYGSFWIHLHKKVMFKDIGVS.....SLHLYKKGEEFPREVVLLHYTQWPDCGAPPSSSTLSVMVNTFKATNGPVIVHCSAGIGRSGTFISININMAKIERFGNISIKDSVLELRRQLDQYIFIFKVINDVLTDMGDISIPPPLTFTPKPSTDMIASLSMTQT : TRPB_SULSO

                  : 189-------199-------209-------219-------229-------239-------249-------259-------269-------279-------289-------299-------309-------319-------329-------339-------349-------359-------369-------379-------389-------399-------409-------419-------429-------439-------449-------459------- :
OrigSeq           : YGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRADLNANYIQVGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQGRPLLNS :OrigSeq
cons              : ------HHHHHHHHHHH------------------------------------------E------EEEE------HHHHHHHHHHHHH---EEEEEE---HH------------------EEEE-----EEE---------HHHHHHH------EEEEEEEE--------------HHHHHHHHH-----HEEEE------------EEEEEEEE------HHHHHHEEHH------EEHHHHHHHHHHHH---H-----HHHHHHHHHH--------- :cons
dsc               : ------HHHHHHHHHHH-------------HH----HHHHHHH--------EEE-----EE------EEE--------HHHHHHHHH-----EEEEE----HHHHH---------------EEEEE----EEE------HHHHHHHHHHH-----EEEEEEEE------------HHHHHHHHHHHHHHHHH-------------------EEEEE------HHHHHHEE----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------- :dsc
mul               : -HHHHHHHHHHHHHH--------------------------------------------EE------EEEE------HHHHHHHHHH-----EEEE-HHHHHH--------------------------H-HH---H--H-H-HHHH--------EEEEEEE---------------HHHHHHHHH-----------------------EEEEEE--------E-HHHHHHH-------HHHHHHHHHHH-------H---HHHHHHHHHHH-------- :mul
nnssp             : ---HHHHHHHHHHHHHHH------------------------------------------------EEEE-------HHHHHHHHHHH----EEEEEHHHHHH------------------EEE------------------HHHHHHH------EEEEEE----------------HHHHHHHHH-----EEEE-----------HHHHHHHHHH-------HHHHHHHHHH-----EEHHHHHHHHHH-----------HHHHHHHHHH--------- :nnssp
phd               : -----------EEE-------------------------------------------HHH-----EEEEEE----HHHHHHHHHHHHHH---EEEEEE--------------------EEEEEEE-----EEE------------EEE-------EEEEEEEE--------------HHHHHEE--------EEEE------------EEEEEEEEE----EEEEEEEEEEE------EEHHHHHHHHHHHH---E-------EEEEEEE---------- :phd
pred              : ---HHHHHHHHHHHHHHH----------EEE---------HHHHHHHHHHHHHHHH---EEE----EEEE------HHHHHHHHHHHHH---EEEEE----HHHHH---------------EEEEE---------------HHHHHHHHH-----EEEEEEEE-----------HHHHHHHHHHHHHHHHHHHEEE--------------EEEEE-------HHHHHHHHHH-------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH------- :pred
zpred             : ---HHHHHHHHHHH---------------EEEEE---------EEEEEEEEEEEEEEEEEEE----EEEEEEE----HHHHHHHHHHH---HHEEEEHHHHHHHHH---------------EE------EEE-----------HHHHH--------EEEEEE---------------HHHHHHHHHH-----EEEE-------------EEEEEEE----EEEEEEEEEEHH-----HHHHHHHHHHHHHH-----EE--HHHHHHHHHHHHH------E :zpred


access            : EEEEE-BEEBBEBBBBEE-EBEEEEEEEBBEBBBB-EBEEBEEBEBBEEEEBEBEBBBBBBEBE-EBBBBBEBEBEE-BEEBBEBBBEE-BBBBBBBBEBEEEBEEEBEBEEEBEEE-EBBBBBBBBEEBBBEBBBEBBBBEBBBBEBEEEEEEE-BBBBBBBEE-EEEEBEEEEBBEBBBBBBBEBEEEEBBBBBBEE-E-BBEBBBBBBBBBBBBEBE-BBBBBBBBBB-EEEEEBBBBBEBBBEB-BEEEEBEBEEEEEBEBBBEBBEBEB-EB-EE : access

PHD Rel           : 9986433111212213455667788877632222454354457743455345542211111357249897348854659999999999469557987342222343469986555553135454212021122456555322211112227977138998864278887987653412676221112479723452258866675321113324531356212125556662445541121577898687525721245444136777522245444699 : PHD Rel
Pred Rel          : 0077779990509996767009099096766698896776668588790797955600006788865566688997668999999897696589997766766677067999998998876777766660666676656558588878567767060769995999999887878705786888868786875606799908569999876877568698866686778888777776650888899888886757777667889799997689999000 : Predator Rel


dssp              : --HHHHHHHHHHHHHHHHH---------E-----------------E---E------EEEEEE--EEEEEE----HHHHHHHHHHHHH-----EEE---HHHHH-HHH---------EEE--EEEEEEEEEEEEEE--EEEEEEEEEEEE-----EEEEEEEE----------HHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------EEE------HHHHHHHHHHH--HHH----HHHHHHHHHHH--------HHHHHHHHHHHHHH------- :dssp
define            : -HHHHHHHHHHHHHHHHHHHEEEE----EEEE--------------------------EEEE--EEEEEEE-EEEE-HHHHHHHHHHHHH--EEEEE-HHHHHHH---EEEE---------EEEEEEEEEEEEEE--EEEEEEEEEEEEE---EEEEEEEE-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------EEEEEE----HHHHHHHHHHHHHH------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHH------ :define
stride            : --HHHHHHHHHHHHHHHHHH--------EE---------------EE---E------EEEEEE--EEEEEE----HHHHHHHHHHHHHH----EEE---HHHHH-HHH--------EEEE--EEEEEEEEEEEEEE--EEEEEEEEEEEE--EEEEEEEEEEE----------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------EEE------HHHHHHHHHHHH-HHH----HHHHHHHHHHH--------HHHHHHHHHHHHHH------- :stride


Q3 values for 1yptb-1-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	57.14	52.50	54.64
dsc	66.79	63.57	63.21
pred	70.00	68.93	68.93
mul	67.14	65.36	64.29
nnssp	65.36	64.29	62.50
zpred	61.07	60.36	59.64
cons	67.86	65.71	65.71