Results for 1yrna-2-AS


1yrna-2-AS    : TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI : HD1_BRANA
HD1_BRANA     : EIMRKRGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHN : HXDC_CHICK
HXDC_CHICK    : QGRSRKKPYTKQQIAELENEFL...LNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV : S50342
S50342        : IWDGEEYCFKEKSRSVLRDWYS...HNPYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRAA : HM20_CAEEL
HM20_CAEEL    : FLDARRRNFSKQATEVLNEYFYGHLSNPYPSEEAKEDLARQCNITVSQVSNWFGNKRIR..YK : MMU57343
MMU57343      : DKKRQKGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDAGLTILQVNNWFINARRR.IVQ : HXDB_MOUSE
HXDB_MOUSE    : PQRSRKCPYTKYQIRELEREFF...FNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL : HMD2_CHICK
HMD2_CHICK    : ...KEKVVYTDHQRLELEKEFH...CNRYITIRRKSELAVNLGLSERQVKSWFQNRRAKERKI : D83144
D83144        : IWDGEQHCFKERTRSLLREWYL...QDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAA : XLU53529
XLU53529      : GKMGRRTAFTSDQISTLEKTFQ...KHRYLGASERRKLAAKLQLSEVQIKTWFQNRRMKYKRE : S58439
S58439        : GSGKRRGNLPKESVQILRDWLYEHRYNAYPSEQEKVLLSRQTHLSTLQVCNWFINARRRLLPD : EMU69103
EMU69103      : ........FTTEQLDQLRREFD...ENRYLSEKRRQDLAQQLGLNESQIKIWFQNKRAKIKKT : MOX1_MOUSE
MOX1_MOUSE    : SSKARKTAFTKEQLRELEAEFA...HHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV : HSU68385
HSU68385      : EPRRNKGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR.IVQ : HXAD_HUMAN
HXAD_HUMAN    : ...GRKVPYTKVQLKELEREYA...TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV : HSU69961
HSU69961      : .KRQRRTHFTSQQLQQLEATFQ...RNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR : MOX2_XENLA
MOX2_XENLA    : NSKPRKTAFTKEQIRELEAEFA...HHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRV : S22269
S22269        : TKPYRGHRFTKENVRILEWFAKNIAENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI : S52424
S52424        : .QKPRRTHFTSHQLTELENWFS...RNRYPDMACREEIAVWISLTEPRVRVWFKNRRAKWRKR : S71478
S71478        : KRKRKKHRHTTDQIRHMEALFK...ETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAI : S71477
S71477        : QRPRKKHRHTQHQIQEMEAFFK...ECPHPDDKQRKALSKELGLEPLQVKFWFQNKRTQMKTQ : S71476
S71476        : SKKRKKHRHTADQIREMEALFK...ESPHPDEKQRQQLSKRLGLHPRQVKFWFQNRRTQIKTI : CELC10G85
CELC10G85     : IWDGEEYCFRDKSRVLLRDWYC...RNSYPSPREKRELAEKTHLTVTQVSNWFKNRRQRDRAG : CEW05E102
CEW05E102     : IWDGEQHCFKERTRSLLREWYL...KDPYPNPPKKKELANATGLTQMQVGNWFKNRRQRDRAA : CEF17A23
CEF17A23      : YLDARRRNFSKTSTEILNEYFLANINHPYPSEEVKQALAMQCNISVAQVSNWFGNKRIR..YK : ATTS3837
ATTS3837      : SNNAWRRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKP : HSU68727
HSU68727      : K....NGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR.ILQ : CAUP_DROME
CAUP_DROME    : NYDLAAKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE : CUP9_YEAST
CUP9_YEAST    : K.QNSGSNLPKETVQILNTWLLNHLNNPYPTQQEKRELLIKTGLTKIQLSNWFINVRRRKIFS : YGJ6_YEAST
YGJ6_YEAST    : H.KAHGSNLPKATVSILNKWLHEHVNNPYPTVQEKRELLAKTGLTKLQISNWFINARRRKIFS : CEF33H1
CEF33H1       : DASSRRTSFTAEQLDVLENAFR...ADTYPHANARESISKETGLSEEKIMTWFSNRRARCRKN : CEY53C12C1
CEY53C12C1    : ANARRLSTFTNEQLQSLEEVFL...RDPYPSPNERADLVKRTNLPEARIQVWFSNRRAKWRKT : GGGSC2
GGGSC2        : ...TRRTIFTEEQLQALETLFH...QNQYPDVITREHLANRIHLKEERVEVWFKNRRAKWRHQ : CEF46F3
CEF46F3       : MISRRKVLFSPQQVHVLERKFQ...INRYLSAADRENLAKSINLSATQVKIWFQNQRYKCKRQ : CELM61
CELM61        : CSHNDTFRFTNEQTDALEHKFD...SHKYLSPQERKKLAKSLSLSERQVKTWFQNRRAKWRRV : MMBARX1
MMBARX1       : AKKGRRTVFTELQLMGLEKRFE...KQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKI : BFU82487
BFU82487      : KAEEKRTAFTSEQLQRLKKEFQ...ENRYLTEQRRQDLARELKLNESQIKIWFQNKRAKIKKA : S36770
S36770        : ...TRRTAFTREQLSRLEKEFL...RENYVSRTRRSELASMLNLSETTIKIWFQNRRMKAKRR : HMLA_DROME
HMLA_DROME    : SNTNNSTNFTNKQLTELEKEFH...FNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKR : HM07_CAEEL
HM07_CAEEL    : R.....TTFTVEQLYLLEMYFA...QSQYVGCDERERLARILSLDEYQVKIWFQNRRIRMRRE : CELC02F121
CELC02F121    : RSNRPTTTFTSEQVTLLELEFA...KNEYICKDRRGELAQTIELTECQVKTWFQNRRTKKRSS : ZN12_MICSA

              : 128-------138-------148-------158-------168-------178-------188 :
OrigSeq       : TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI :OrigSeq
cons          : ----------HHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHH---- :cons
dsc           : ------HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH--HHHHHHHHHHHHHHH---- :dsc
mul           : -----------HHHHHHHHHHH------------HHHHHHHH------E-------------- :mul
nnssp         : ----------HHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHH- :nnssp
phd           : -----------HHHHHHHHHHHHH--------HHHHHHHHH-----HHHHHHHH-HHH----- :phd
pred          : --------HHHHHHHHHHHHHHHH--------HHHHHHHHH----HHHHHHHHHHHHHHH--- :pred
zpred         : -----------HHHHHHHHHH-----------HHHHHHHHHHHHH-EEEEEEHHHH------- :zpred

access        : EEEEEEEEBEEEBBEBBEE-BBE-BEEE-BEEEEEEEBBEEBEBBEBEBEBBBEE-EBEEEEE : access

PHD Rel       : 999888778704799999999982157888913568999652765213244342112113799 : PHD Rel
Pred Rel      : 009999707787999999988787799999776899999975667568686668687777000 : Predator Rel

dssp          : ----------HHHHHHHHHHHHH--------HHHHHHHHH-----HHHHHHHHHHHHHHHHH- :dssp
define        : ---------HHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH :define
stride        : ---E--E---HHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHH- :stride

Q3 values for 1yrna-2-AS  View SS in Rasmol

	dssp	define	stride
phd	84.13	77.78	84.13
dsc	80.95	87.30	82.54
pred	88.89	85.71	88.89
mul	61.90	55.56	58.73
nnssp	95.24	92.06	95.24
zpred	65.08	65.08	61.90
cons	90.48	87.30	90.48