
Results for 2bopa-1-DOMAK


2bopa-1-DOMAK    : SCFALISGTANQVKCYRFRVKKNHRHRYENCTTTWFTVADNGAERQGQAQILITFGSPSQRQDFLKHVPLPPGMNISGFTASLDF : VE2_HPV13
VE2_HPV13        : TPIVQLQGDSNCLKCFRYRLHEKYKDLFLLASSTWHWTAPN..NSQKHALVTLTYVNEQQRQDFLKTVKIPPTITHKLGFMSLQL : VE2_HPV25
VE2_HPV25        : PPVILVRGDANTLRSFRNRAKHMYTGLFSSFSTAWSWVAGDGIERLGRSRMLISFISNSQRKHFDDAVRYPKGVDRSFGSFDS.. : VE2_HPV34
VE2_HPV34        : APIVHLKGDKNSLKCLRYRMHKGYSHLFNNVTTTWHWTNN...TNSKCGVITFMFSSTSQQKQFLQCAKIPPTISVSSGYMS... : VE2_HPV47
VE2_HPV47        : PPVILVRGDANTLKCFRNRARNKYRGLFRSFSTTFSWVAGDSIERLGRSRMLISFSCLTQRRDFDDAVKYPKGVEWSYGSLDS.. : VE2_HPV32
VE2_HPV32        : TPVIHLQGDPNCLKCLRWRLKKNCSHLFTQVSSTWHLTEKD..RDSKDGIITIHYYNEEQRDKFLSTVKLPPGIKSCIGYMSMLQ : VE2_HPV17
VE2_HPV17        : PPVILLRGEANKLKCFRYRAKKRYGSLVKYYSTTWSWVGANTNDRIGRSRMLLAFNTYDERELFIQKMKLPPGVDWSLGHLDD.. : VE2_HPV23
VE2_HPV23        : PPVILLRGGANTLKCYRYRFRKKHAGKFYYVSTTWSWIGGHSTDRVGRARMLIAFHSNHEREKCIQEMKLPLGVDWSYGQFDD.. : VE2_HPV28
VE2_HPV28        : APVVHLKGDPNCLKCFRYRLHKGKRKLYCKTSSTWRWSCE...SENQAAFVTIWYTSYSQRNEFLSTVKVPPGIQVILGHMSMF. : VE2_HPV08
VE2_HPV08        : PPVILVRGEANTLKCFRNRARVRYRGLFKYFSTTWSWVAGDSTERLGRSRMLILFTSAGQRKDFDETVKYPKGVDTSYGNLDS.. : VE2_HPV2A
VE2_HPV2A        : VPVIHLRGDANCLKCFRYRVQKHKDVLYARVSSTWHWAGG...NGDKTAFVTLWYTSVEQRTEFLTRVSIPKGLIALPGYMSAF. : VE2_HPV65
VE2_HPV65        : PPMILLKGTANSLKCWRYRKQNSSNCGFLFMSTVWNWVGDVSEN.HS..RMLIAFKSPGQRDSFVKHNLFPKLCTYTYGSLNS.. : HPU317883
HPU317883        : TPVVQLQGDANCLKCLRYRLHAKYKTLFVAASSTWRWTCSD..TSS.NALVTLTYVDEQQRQQFLNTVKLPPKVTYKVGYMSLQL : VE2_BPV2
VE2_BPV2         : SCFALISGSANQVKCYRFRVKKNHRHRYENCTTTSFTVADNGAERQGQAQILITFGSPGQRQDFLKHVPLPPGMNISGFTASLD. : PPHE6E3
PPHE6E3          : TPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPK..APHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSLHL : VE2_HPV49
VE2_HPV49        : PPVILLRGDPNILKCYRYRDKKRKLGLVKHYSTTWSWVGVDGNERIGRSRMLLSFTSNSTRSQYVKIMKLPKGVEWSFGNFDK.. : VE2_HPV09
VE2_HPV09        : PPLMLLRGDANVLKCYRFRERKKKRGLVKYYSTTWSWVGEDSCDRVGRARMILAFDTYEHRQQFIRTMKLPPTVDWSLGNVDD.. : HPU317873
HPU317873        : PPVILLRGDANTLKCYRYRFRKKHAGGFRFVSTTWSWIGDASNDRIGRSRMLLAFYSESQREKFIQTMKLPTGVEWSLGQFDD.. : PAVCGS3
PAVCGS3          : PPVLVLAGDPNSLKCIRYRLSHKHRGLYLGASTTWKWTSGGSKHDRGSARMLLAFLSDQQREDFMDRVTFPKSVRVFRGGLDE.. : VE2_HPV24
VE2_HPV24        : PPVILLRGGANTLKCFRNRAKLRYRGHYKAFSTSWSWVAADGTERLGRSRLLVSFTSFKQRSGFLDLVRFPKGVDWSLGSFDK.. : VE2_HPV63
VE2_HPV63        : PPIICLKGGPNQLKCLRYRIKASNSSDFESISTTWHWVHNKCTDRVGHARMLVRFISTEQRDRFLDKVVVPKSVSVILGAFDG.. : RAPO1
RAPO1            : PPVICLKGGNNQLKCLRYRLKAKHRTLFDCISTTWSWVDNSSTCRVGSGRVLIKFKDEAQREKVLEEVPIPRHMQVFVGNFFG.. : VE2_CRPVK
VE2_CRPVK        : PPVICLKGGHNQLKCLRYRLKSKHSSLFDCISTTWSWVDTTSTCRLGSGRMLIKFADSEQRDKFLSRVPLPSTTQVFLGNFYG.. : VE2_BPV4
VE2_BPV4         : PPVLLLQGAANTLKCFRRRATQAHPHKFLCMSTSWTWVSKTSPLKSG.HRMLIAFSNSEQRNCFLASVRLPKGVSAVKGALDG.. : HPU317923
HPU317923        : PPILLIKGLANSLKCWRYRLKKYT.RYFKCMSTVFRWVDIDVPE.SSRHKLLVVFNDTTQRDVFMKLVTLPRGCTYTFGTLNS.. : HPU317903
HPU317903        : PPVLIITGQQNNLKCWRYRFSQKYADLYECCSSAWKWLGPKSEGYRGDAKLLIAFKNPEQRLSFLNTVGLPKNTTYSMGHLDS.. : HPU317893
HPU317893        : PPLVLFTGQQNNLKCWRNRCTTKYASLFLCFSSVWKWLGPNSDG..GAAKVLVAFKSDAQRQVFLNTVHIPKGTTITLGRLDS.. : VE2_HPV41
VE2_HPV41        : HYLVGAKGPVNSLRCLRYKWKNKYSGDIMYLGTTFTWTESDGTERCGSGRFFCAFSNETKREKFLKSVKIPKNIGLFRAHAEK.. : MRU018343
MRU018343        : ACLLIIKGSSNQVKCLRFRLKSWHHSLFSYISTTWQWVPSV.SNRIGRSRILVMCEDSAQMDRFLCTVKIPAGMTVEQCSMAS.. : VE2_PAPVD
VE2_PAPVD        : LPCLLISGTGNQVKCYSFRVKRWHRDKYHHCTTTWWAVGEQGSERPGDATVIVTFKDQSQRSMFLQQVPLPPGMSAHGVTMTVD. : VE2_PAPVE
VE2_PAPVE        : QPCLILSGNGNQAKCYRFRCKRYFREHYQHITTTWWTVGERGSERHGDACVLVTFKDSSQRGVFLKRVPLPPGMRAQALTMIAD. : VE2_HPV40
VE2_HPV40        : TPIIQLEGEANCLKCFRYRLG.KVSHLFCNSSTTWRWTTES..RTEKNAIITLTYSSVQQRSDFLAIVKIPKTIKHSLGMLTL.. : VE2_HPV11
VE2_HPV11        : TPIVQLQGDSNCLKCFRYRLNDKYKHLFELASSTWHWASPE..APHKNAIVTLTYSSEEQRQQFLNSVKIPPTIRHKVGFMSLHL : VE2_HPV57
VE2_HPV57        : VPVIHLQGEANCLKCFRYRVQKHKDVLFVKASSTWHWACG...NGDKTAFVTLWYKSQEQRAEFLTRVHLPKGVKALPGYMSAF. : VE2_HPV29
VE2_HPV29        : APVIHLRGDPNSLKCFRYRLQNGKKGLYCKASSTWRWSCE...PENQSAFVTIWYTSVTQRAEFLANVKIPPGMQAILGHMSV.. : VE2_HPV10
VE2_HPV10        : APVIHLRGDPNSLKCFRYRLHHGKRKLYSRSSSTWRWSCE...SENQAAFVTLWYTSDTQRTEFLNVVKVPPGIQVILGYMSI.. : HPU317933
HPU317933        : SPVIHLKGDPNKLKCFRYRLQHSVPELFDKASSTWHWAGGQ..STTRAAFVTLWYVNVEQRKQFLNRVTIPKGIQATAGYMSMC. : HPVT72ELG3
HPVT72ELG3       : APIIHLKGEPNKLKCFRYRLQQSVPNLFLKASSTWHWACGG..DTTKCAFVTLWYVDTDQRTQFLSRVNIPKGIQATAGYMSMC. : HPU317943
HPU317943        : TPVIHLKGEANRLKCCRYRFQ.KYKTLFTDVTTTYHWTSTD..NKDS.SIITILYKDETQRDTFLNVVKIPPSVQVILGQMSC.. : VE2_HPV30
VE2_HPV30        : TPVVHLKGEPNRLKCLRYRCQ.KHKHLFVNISSTYHWTNTH..TEY..SYITVVYKDETQRANFLNVVKIPPSIKIVMGHMTGVD : VE2_HPV53
VE2_HPV53        : APVVHIKGEANRLKCLRYRFQ.KHKQLFVTVSSTYHWTNVN..CAVNNSYITVVYKDETQRQKFLDIVKIPPSVSLVLGHMTCVD : HPV59VG3
HPV59VG3         : TPIIHLKGDKNGLKCLRYRLR.KVHWLFENISSTWHWTGNR..GSAKTGILTLTYTSETQRNEFLDTVKIPNSVQIHVGYMS... : VE2_HPV18
VE2_HPV18        : TPIIHLKGDRNSLKCLRYRLR.KHSDHYRDISSTWHWTGAG...NEKTGILTVTYHSETQRTKFLNTVAIPDSVQILVGYMT... : VE2_HPV45
VE2_HPV45        : TPIIHLKGDKNSLKCLRYRLR.KYADHYSEISSTWHWTGC....NKNTGILTVTYNSEVQRNTFLDVVTIPNSVQISVGYMT... : VE2_HPV70
VE2_HPV70        : TPIVHLKGDKNGLKCLRYRLR.KFNSLYENISCTWHWIGGK..GSKHTGILTVTYTTEAQRQKFLETVRIPPSVHVSVGYMT... : VE2_HPV39
VE2_HPV39        : TPIIHLKGDKNGLKCLRYRLQ.KYDTLFENISCTWHWIRGK..GTKNAGILTVTYATESQRQKFLDTVKIPSSVHVSLGYMT... : VE2_HPV51
VE2_HPV51        : AFIVHLKGDTNCLKCFRYRFT.KHKGLYKNVSSTWHWTSNT..T....GIVTIVFDSAHQRETFIKTIKVPPSVTLSLGIMT... : VE2_HPV26
VE2_HPV26        : VFIVHLKGDTNSLKCLRYRFK.KHKGLYCNVSSTWHWTSND..NQQ..GIVTITFNSITQRNNFLTTVKIPQSITSTLGIMS... : VE2_HPV52
VE2_HPV52        : APIIHLKGDPNSLKCLRYRVK.THKSLYVQISSTWHWTSNE..TNNKLGIVTITYSDETQRQQFLKTVKIPNTVQVIQGVMS... : VE2_HPV33
VE2_HPV33        : APIVHLKGESNSLKCLRYRLK.PYKELYSSMSSTWHWTS.D..KNSKNGIVTVTFVTEQQQQMFLGTVKIPPTVQISTGFMT... : VE2_HPV58
VE2_HPV58        : SPIVHLKGDPNSLKCLRYRLK.PFKDLYCNMSSTWHWTS.D..KGDKVGIVTVTYTTETQRQLFLNTVKIPPTVQISTGVMS... : VE2_RHPV1
VE2_RHPV1        : TPIVHLKGESNCLKCLRFRLG.KHKHLYINISSTWRWAN....HASEKAIVTVTFANELQRQQFLNTVKIPSTVTLSQGVMT... : HPU374883
HPU374883        : TPIVHFKGEPNTLKCFRQRIQ.KYKHLFEQASSTWHWACVP..TTKNRGIVTLTYSSVEQRQQFLVTVRIPPSISMSLGVMS... : VE2_HPV31
VE2_HPV31        : TPIIHLKGDANILKCLRYRLS.KYKQLYEQVSSTWHWTCTD..KHKN.AIVTLTYISTSQRDDFLNTVKIPNTVSVSTGYMT... : ZF64_HUMAN

                 : 326-------336-------346-------356-------366-------376-------386-------396-------406-- :
OrigSeq          : SCFALISGTANQVKCYRFRVKKNHRHRYENCTTTWFTVADNGAERQGQAQILITFGSPSQRQDFLKHVPLPPGMNISGFTASLDF :OrigSeq
cons             : --EEEE-----HHHHHHHHH-----EEEEEE-EEEEEE----------EEEEEEE-------HHEEEE-----EEEEEEEEE--- :cons
dsc              : --EEEE--------EEEEEEE----EEEEEE-EEEEEEE---------EEEEEEE----HHHHHEEEE-----EEEEEEEE---- :dsc
mul              : --EEEE------EEEEEEH-------EEE--------------------EEEEEE-------HHHHHH------EEEE------- :mul
nnssp            : --EEEE------EEEEEEEE-------EEE----EEE------------EEEEEE---------EEEE-------------EE-E :nnssp
phd              : --EEEE---HHHHHHHHHHH-----EEEEEEEEEEEEE----------EEEEEEEE------EEEEEEE----EEEEEEEEE--- :phd
pred             : -----------HHHHHHHHHHHHHH--------EEEEE-----------EEEEEE---HHHHHHHH------------------- :pred
zpred            : EEEEEEE----EEEEEEHH-------EEE--------------------EEEEE-----HHHHEEEE------EEEEEEE----- :zpred

access           : EEBBBBEEEEEEBEBBEEEBEEE-EEBBEEBEBEB-BB-EEEEEEEEEBBBBBBBEEEEEEEEBBE-BEBEEEBEBBBB-BEEEE : access

PHD Rel          : 9858862981267888766224333267764346898628985556526899987156301203566534773467641123189 : PHD Rel
Pred Rel         : 0055578999986889999677666656666670666789999976755590965877687798765569999766577666000 : Predator Rel

dssp             : -EEEEEEE-HHHHHHHHHHHHHH-HHH--EE---EEEE------EEEEEEEEEEE--HHHHHHHHHH-------EEEEEE----- :dssp
define           : ---EEEE-HHHHHHHHHHHHHHH------------EEEEE---EEEE--EEEEEE-HHHHHHHHHHHH------EEEEEEEEE-- :define
stride           : -EEEEEEE-HHHHHHHHHHHHHHH-----EE---EEEE------EEEEEEEEEEE--HHHHHHHHHH-------EEEEEE----- :stride

Q3 values for 2bopa-1-DOMAK  View SS in Rasmol

	dssp	define	stride
phd	60.00	54.12	60.00
dsc	56.47	50.59	56.47
pred	67.06	64.71	69.41
mul	52.94	54.12	54.12
nnssp	42.35	43.53	44.71
zpred	55.29	51.76	56.47
cons	63.53	57.65	63.53