Results for 2pgd-1-AUTO.1


2pgd-1-AUTO.1    : AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHF : AB006102
AB006102         : ARGDIGLIGLAVMGQNLILNMADHGYTVVAYNRTTAKVDRFLENEAKGKSILGAHSIKELVDQLKRPRRIMLLVKAGAPVDEFINQLLPYLEEGDIIIDGGNSHFPDSNRRYEELAKKGILFVGSGVSGGEEGARTGPSLMPGGNEKAWPHIKEIFQDVAAKS.DGEPCCDWVGDAGAGHY : 6PGD_CERCA
6PGD_CERCA       : AKADIALIGLAVMGQNLVLNMNDKGFVVCAYNRTVEKVNQFLKNEAKGTNVIGATSLQDMVNKLKLPRKIMLLVKAGSAVDDFIQQLVPLLSPGDVIIDGGNSEYQDTARRCDELRAKKILYVGSGVSGGEEGARHGPSLMPGGHPEAWPLIQPIFQSICAKA.DKEPCCEWVGEGGAGHF : I40708
I40708           : ....IGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVVAENPG..KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKVPSIMPGGQKEAYELVAPILTKIAAVG.GEP.CVTYIGADGAGHY : MTCY35928
MTCY35928        : GIAQIGVTGLAVMGSNIARNFARHGYTVAVHNRSVAKTDALLKEHSS..KFVRSETIPEFLAALEKPRRVLIMVKAGEATDAVINELADAMEPGDIIIDGGNALYTDTMRREKAMRERGLHFVGAGISGGEEGALNGPSIMPGGPAESYQSLGPLLEEISAHV.GVP.CCTHIGPDGSGHF : 6PGD_BACSU
6PGD_BACSU       : MFNSIGVIGLGVMGSNIALNMANKGENVAVYNYTRDLTDQLIQKLDG..SLSPYYELEDFVQSLEKPRKIFLMVTAGKPVDSVIQSLKPLLEEGDVIMDGGNSHYEDTERRYDELKEKGIGYLGVGISGGEVGALTGPSIMPGGDRDVYEKAAPILTKIAAQVGP...CCVYIGPKGAGHF : 6PGD_HAEIN
6PGD_HAEIN       : VKGDIGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLQGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGDVVDQFIEALLPHLEEGDIIIDGGNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGNQEAWQYVKPIFQAISAKTEQGEPCCDWVGGEGAGHF : AB007907
AB007907         : PSTGIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQNLPVYGYHDPEAFVHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKEVAELGLLYLGLGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNF : 6PGD_HUMAN
6PGD_HUMAN       : AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKGKGILFVGSGVSGGEEGPRYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHF : 6PGD_SYNP7
6PGD_SYNP7       : ALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQ..NIVPAYSLEDFVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEALGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRTIAAQVDP...CVTYIGPGGSGHY : B69870
B69870           : MKKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKG.....AIWKDTVKDLSKEADVIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGLAIMVGGEKEAFEACMPIFSLMGEN.......IQYQGPAGSGQH : 6PGD_TRYBB
6PGD_TRYBB       : MSMDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTTEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSC : AE0011579
AE0011579        : ..MDVGIYGLGVMGSNLALNIADNGFNVSVYNRDNEKTEIFVKQNSHNG....FKDIESFVKSLKTPKKIILMVTS.SAIEKVIEQILPFMNKSDIIIDGGNSHYKSTMRLEKELFAKDIYFVGLGISGGERGARFGPALMYGGSKSAYEILEPMLNKIAAKTKNNDICSTYIGENGSGHY : 6PGD_SYNY3
6PGD_SYNY3       : TKRTFGVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFMAERAV..DIKAAYTVEEFVQLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLGFVGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDNPACVTFIGPGGAGHY : LLU743221
LLU743221        : AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVYKEHQD..NLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPGKP.CVAYMGANGAGHY : YPU14633
YPU14633         : ....IGVVGMAVMGSNLALNIESRGYSVSILNRSSDKTDEVVAENPG..NLVPSYTVEEFVDSLEKPRRILLMVKAGEATDKTIASLTPHLDKGDILIDGGNTYYKDTIRRNRELSAQGFNFIGTAVSGGEEGP............................................... : D89161
D89161           : EVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSIVGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYGPSLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAGHY : CET25B98
CET25B98         : AEADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFLANEAKGTKIIGAHSIEEMCKKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIMFVGCGVSGGEE................................................. : YQEC_BACSU
YQEC_BACSU       : ..MKIGLIGLGKMGINIGKQFIDRNHQVVGYDVNQAAVDELKAYG.....AEGTTNLKEFISLLHPPRILWVMVPHGIVD.AVLRDVSPLLSKGDMIIEAGNSHYKESIRRYNQMKEAGIHYLDAGTSGGMEGARHGACFMVGGDHEAWEIVEPLFRDTAVEN.....GYLYAGEAGSGHF : MTCY22G810
MTCY22G810       : ..MQLGMIGLGRMGANIVRRLAKGGHDCVVYDHDPDAV.KAMAGEDR...TTGVASLRELSQRLSAPRVVWVMVPAGNITTAVIEELANTLEAGDIVIDGGNTYYRDDLRHEKLLFKKGIHLLDCGTSGGVWGRERGYCLMIGGDGDAFARAEPIFATVAPGVADGEVGYLHCGPCGSGHF : STMDNAGYR1
STMDNAGYR1       : ..MELGLVGLGKMGGNMRERIRRAGHTVVGYDRNPD..............LADVHSLEELVGKLSAPRVVWVMVPAGEATQATVDRLGELLEPGDVVVDGGNSRWTDDEKHAEELAAKGIGFVDCGVSGGVWGLENGYALMYGGDAENVAKVQPVFDALKP...EGD.GAVHAGKVGAGHF : MSORIREP3
MSORIREP3        : ..MQLGLIGLGKMGFNMRERLREAGHEVIGYDPRPE..............VSDVANLEELAGALSAPRVVWVMVPSGTITHSTIVELAGVLSPGDLVIDGGNSRYTEDGPHAELLGEKGISFIDAGVSGGIWGLTEGYGLMVGGSDDDVARAMPIFDALRP...PGDVGFVHAGPVGAGHY : ATU487181

                 : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------1 :
OrigSeq          : AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHF :OrigSeq
cons             : ----EEEEEEE--HHHHHHHHH----EEEEE----HHHHHHHHHH------E----HHHHHHHH----EEEEEE------HHHHHHHHHHH----EEE---------HHHHHHHHHH---EEEEE---------------------HHHHHHHHHHHHHHH--------EEE--------- :cons
dsc              : -------EEEHHHHHHHHHHH-----EEEEE---HHHHHHHHHHH----------HHHHHHHHHHHHHHHEEEE-------HHHHHHHHHH----EEE-------HHHHHHHHHHHHHHHEEEEE--------HH-----------HHHHHHHHHHHHHH---------EEE--------- :dsc
mul              : ----EEEE-EEEH----HHH------EEEEE-----HHHHHHHH----------HHHHHHHHHHH----EEEEEH-----HHHHHHHHHH-----EEE-------------HHHHHHHHEEEE-------------------------HHHHHHHHHHHHH-------EEEEE-------- :mul
nnssp            : ------EEEE----HHHHHHHH----EEEEE----HHHHHHHHHH-----EE----HHHHHHHH-----EEEEE-----HHHHHHHHHHHH----EEE---------HHHHHHHHHH---EEEE-----------------------HHHHHHHHHHHHHH--------EEE--------- :nnssp
phd              : --EEEEEEEEE--HHHHHHHHH----EEEEE----HHHHHHHHHH------E----HHHHHHHH----EEEEEE------HHHHHHHHHH-----EEEE--------HHHHHHHHHH---EEEEE--------------------HHHHHHHHHHHHHHHH--------EEEE-------- :phd
pred             : ----EEEEEEEEHHHHHEEE------EEEEEE---HHHHHHHHHH---------HHHHHHHHHH-----EEEEE-----HHHHHHHHHHH-----EEE-------HHHHHHHHHHHHH--EEEE-----------------------HHHHHHHHHHHHHHH-------EEE--------- :pred
zpred            : ---EEEEEEEEEEHHHHHHEHH---EEEEEE-------HHHHHHH---------HHHHHHHHHHHHHHHEEEEEE---HHHHHHHHHHHHHHHHEEEEE---------HHHHHHHHHHHHEEEEE-----------------------HHHHHHHHHHH----------EE---------- :zpred


access           : EEBEBBBBBBBBBBBBBBB-BEEEBBBBBBBE-E-EEBEEBBEEEEEEEEBBBB-BBEEBBEEBEEE-BBBBBBEBBEBBEBBBEEBBEBBEEBEBBBEBE-EEBEEEEEEBEEBEEEBBBBBBBBBEEEEEBBEEBBBBBEE-EEEBBEEBEEBBEBBBBEBEEEEBBBBBBBEEBEE-E : access

PHD Rel          : 9516557867412145777773278448996488415889998746899422134568999983599279998718986279999999850689759857887873426999999853965998445786333556874667994366799999999996225899951212245655799 : PHD Rel
Pred Rel         : 0077556765665756577066799759098897777787086787998776666688999985897757090767997667788856888999790989999966667799999996650966787899989989998788999966888588888888867999997599589998000 : Predator Rel


dssp             : --E-EEEE---HHHHHHHHHHHH----EEEE----HHHHHHHH--------EE---HHHHHHHE----EEEE-----HHHHHHHHHHHHH-----EEEE-----HHHHHHHHHHHHH---EEEEEEEE-HHHHHHH--EEEEEE----HHHHHHHHHHH--E-----E-----EE--HHHH :dssp
define           : ----EEEEE-HHHHHHHHHHHHHHHEEEEEEE-HHHHHHHHHHH-----EEEEEEHHHHHHHHH---EEEEEE---HHHHHHHHHHHH-------EEEEE---HHHHHHHHHHHHHHHEEEEEEEEEEEHHHHHHHHEEEEEEE---HHHHHHHHHHHHEEEE--EEEE-------HHHHH :define
stride           : --E-EEEE---HHHHHHHHHHHHH---EEEE---HHHHHHHHHH-------EE---HHHHHHHE----EEEE-----HHHHHHHHHHHHH-----EEEE-----HHHHHHHHHHHHHH--EEEEEEEE-HHHHHHH--EEEEEE-HHHHHHHHHHHHHH--E-----E-E---EE-HHHHH :stride


Q3 values for 2pgd-1-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	70.72	59.12	71.27
dsc	65.19	59.67	66.85
pred	67.40	60.77	66.85
mul	60.77	53.59	59.12
nnssp	69.06	59.12	67.40
zpred	62.43	55.25	60.77
cons	70.72	60.22	70.17