Results for 2rspa


2rspa        : LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAAGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL : VPRT_SRV2
VPRT_SRV2    : LVLLPLLRTAHDIFWVQPITHQKPSLVLWLDGKFTIDTGADVTIIKQEDWPSHWPTTETLTNPRQSSKYLTWKDKENNSG..LIKPFVIPN...LPVNLWGRDLLSQMKIMMCSP : MMTGXPPR1
MMTGXPPR1    : LLLLPYLKLPNHVHWVQEISGFRPMPHISLNGRFLLDTGADKTCIAGRDWPANWPIHQTESGVARSSQPLRWQHED.KSG..IIHPFVIPT...LPFTLWGRDIMKEIKVRLMTD : GAG_AVIMA
GAG_AVIMA    : LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL : VPRT_HUMAN
VPRT_HUMAN   : LLLLPYIKGGNAAYWASQVSENRPVCKAIIQGKFEVDTGADVSIIALNQWPKNWPKQKAVTEVYQSMEILHCLGPDNQES..TVQPMITS....IPLNLWGRDLLQQWGAEITMP : GAG_IPMA
GAG_IPMA     : LLLLLPDNTREDSAYLVVSLNDRPKLRLKINGKFELDTGADKSIISTHWWPKAWPTTESSHCPTISSVALTWESSEGQQG..KFIPYVLP....LPVNLWGRDIMQHLGLILSNE : GAG_IPHA
GAG_IPHA     : AAILQTHRYRDLKKDCQAPERTRESKLCYRCGKECMDSGADKSIISLHWWPKSWPTVVSSHSPAISASALTWRDAEGKQG..CFTPYVLP....LPVNLWGRDVLQAMGMTLTN. : C40899
C40899       : LVLLPSPGDREDSAYLAIPLDERPTMKLLVNGKFETDTGADKSIISLHWWPKSWPTVTSSHSPAVSAAALVWRSTEGRQG..RFTPYVLP....LPVNLWGRDVLQAMGMTLTNE : VPRT_JSRV
VPRT_JSRV    : LLLVPLVIQGKDAYWVQNVTEARPELELRINANFRLDTGADISVISDKYWPTTWPKQMAISNPEQSSSLLTWKDKDGHTG..QFKPYILPY...LPVNLWGRDILSKMGVYLYSP : VPRT_SMRVH
VPRT_SMRVH   : IVILPLQQINSDVYWVQQISQQRPTLKLKLNGKFSLDTGADATVISYTHWPRNWPLTTVATNPQQSAQMLKWEDSEGNNG..HITPYVLPN...LPVNLWGRDILSQMKLVMCSP : HRU46939
HRU46939     : .....................................TGADVSIISEGDWPKSWPLQPGDNTPSRSAQVLHWQDQEGNKG..NVQPYVSA....LPITLWGRDILEQLGLTLTNE : MGU095683
MGU095683    : SAICAPSRDDSNRPSIEV.TWINPFVETGPRQVLKLDTGADVTVINEPSWPCTWPAIPTVGNASRSEFLLQGRIRREKEE.IRVSPYIAA....IGFNILGREALAQLHCVVSNL : HIV1U19428
HIV1U19428   : ...............PQITLWQRPLVTIKIGGPKELDTGADDTVLGEMDLPGRWKPKMIGGKVRQYDQIPIEICGHKTIG....TVLIGP....TPVNIIGRNLLTQLGCTLNF. : PPY09450

             : 1---------11--------21--------31--------41--------51--------70--------80--------90--------100-------110-------120-- :
OrigSeq      : LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAAGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL :OrigSeq
cons         : -EEE---------EEEEE-------EEEEE--EEEE-----EEEEE------------------------EEE------------------EEE-------HHHHHHHHHHEE-- :cons
dsc          : -------------EEEEE-------EEEEEEEEEEE-----EEEEE-----------------HHHHHHHEEEEEE--------------EEEEEEEEE---HHHH--------- :dsc
mul          : EEE-----------EEEE-------EEEEH----H------EEEEE---------------------EHHH-H----------EEEEEE---------------HHHH-EE---- :mul
nnssp        : EEEE---------EEEE---------EEEE---EEE-----EEEE-------------------------EE------------------HHHHH------HHHHHHH--EEE-- :nnssp
phd          : -EEEE---------EEEE-------EEEEE--EEEE-----EEEEEE-----------------------EEE--------EEEEEEEE--EEE-------HHHHHHHHHHEE-- :phd
pred         : -----------EEEEEEE----------HHHHHH--------EEEE----------------------HHHHHHHHH----------------------HHHHHHHHHHH----- :pred
zpred        : HEEE-----------EE--------------------HHHHHEEEE---------------------EEEEE------------EEEEE------EEEEEEHHEHHEEEEEEE-- :zpred


access       : BBBBBE-EEEEEBBBBBBBEEE-E-BEB-BEBEB-BEEEBEBBBBBEE--EEE-EEBEBBEEEE-BBEBBBBEEEEEEEEBBEBBBBBBBBBBBBBBBBBB-EBBEBBEB-B-EE : access

PHD Rel      : 9355313477764122522578861247873234421797638987337788997413336864543121233135689815532443231231320134338998662212269 : PHD Rel
Pred Rel     : 0075690899909000968999898975587866568899975899899999999976687998979778588875679999999760786075668866777788857665000 : Predator Rel


dssp         : -EEE-------EEEEEEEE---------EEEEEEEE-------EEE---------EEE-----EEEE---EEEEEE-----E---EEE--EEE----EEE-HHHHHH---EEE-- :dssp
define       : EEEEE------EEEEEEEEE---------EEEEEE------EEEEE-------EEEEEEEEEEEE---EEEEEEE----EEEEEEEEEEEEEE---EEEEEHHHHHHHEEEEEE- :define
stride       : -EEE-E--E--EEEEEEEE---------EEEEEEEE-------EEE---------EEE-----EEEE---EEEEEE-----E---EEE--EEE----EEE-HHHHHHH--EEE-- :stride


Q3 values for 2rspa  View SS in Rasmol

	dssp	define	stride
phd	68.70	61.74	67.83
dsc	69.57	50.43	66.96
pred	60.00	46.96	59.13
mul	55.65	50.43	54.78
nnssp	67.83	52.17	66.96
zpred	57.39	56.52	55.65
cons	71.30	55.65	70.43