
Results for 3cd4


3cd4         : KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA : HSTITINN2
HSTITINN2    : CNITTTEKSPILEIPSSTVEDAIENASGKDSAQILILEKQLEVSVGDSASLQCQLATPEISWYKGDFRLVFNQVDINDSGEYICKAENSVGEVSASTFLTVQEQKLRDVQETVLPVVFDCISGSEPSVSWYSPQTSFLDNTATLNIFKTDRSLAGQYSCTATNPGSASSSARLILTEG : CD4_RAT
CD4_RAT      : KTVVLGKEGGSAELPCESTSRRSASFAWKSSDQKTILGYKNKLIKG.SLELYSRFDSRKNAWERGSFPLIINKLRMEDSQTYVCELENKKEEVELWVFRVTFNPGTRLLQGQSLTLILDSPKVSDPPIECKHKSSNIVKDSKAFSTHSLRIQDSGIWNCTVTLNQKKHSFDMKLSVLG : CD4_MOUSE
CD4_MOUSE    : KTLVLGKEGESAELPCESSQKKITVFTWKFSDQRKILGQHGKLIRGGSPSQFDRFDSKKGAWEKGSFPLIINKLKMEDSQTYICELENRKEEVELWVFKVTFSPGTSLLQGQSLTLTLDSSKVSNPLTECKHKKGKVVSGSKVLSMSNLRVQDSDFWNCTVTLDQKKNWFGMTLSVLG : A21285
A21285       : KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA : CD4_RABIT
CD4_RABIT    : KTVVRGKAGAIVELPCQSSQKRNSVFNWKHANQVKILGNQGSFWLKGNSPLSNRVESKKNMWDQGSFPLVIKDLRMDDSGTYICEVGDKKMEVELLVFRLTANPNTRLLHGQSLTLTLEGPSVGSPSVQWKSPENKIIETGPTCSMPKLRLQDSGTWSCHLSFQQNKLELDIKIIVLG : D86588
D86588       : KTVVLGKKGEVVELPCETSLKKNVPFHWKTSDQIKILGVQNYFVTRGQSKLTDRIDSKKSSWDRGSFPLLIKDARIEDSETYICEVESKKEEVELQVFGLTANPDTHLLQGQSLTLTLESPPGSSPSVECTSPRGKRIRGRKTLSVSQLGIPDSGTWKCTVFQH.LELVFEINIVVLA : CD4_CANFA
CD4_CANFA    : REVVLGKAGDAVELPCQTSQKKNIHFNWRDSSMVQILGNQGSFWTVGSSRLKHRVESKKNLWDQGSFPLVIKDLEVADSGIYFCDTD.KRQEVELLVFNLTAKWDIRLLQGQQLTLTLENPSGSSPSVQWKGPGNKSKHGGQNLSLSWPELQDGGTWTCIISQSQKTVEFNINVLVLA : AB000483
AB000483     : KEVVLGKAGGTAELPCQASQKKYMTFTWRLSSQVKILESQHSLCLTGSSKLKTRFESKKILWDQGSFPLVIKSLQVADSGIYTCEVENKKREVELLVFGLTAKVDIYLLQGQSLTLTLESPSSSNPSVQWKGPGNKSKSGVHSLSLSQLELQESGTCTCTVSQSQKTLVFNTNILVLA : VGR2_COTJA
VGR2_COTJA   : RCMATNRAGSVISFHVTRGLEIRSQLTEKDSLQCTADKKLSTTPFGGPMPVCKNLDLQKLTVSNGELELILRNISLQDGGDYVCIAQDKKAKTQHCLVKHLTVQEVGNLENQTETIEVLCVNGVPPNITWFFEGIVLKDGNKTLTIRRVRKEDGGLYTCLACNILGCKKAEAFFSVQG : HSNCAML1
HSNCAML1     : RCFASNKLGTAMSHEIRLMAEG..APKWPKVKPVEVEEGESVNPPPSAEPLRIYWMSKILKQDEGQNGLYFANVLTSDHSDYICHAHFQKEPIDLRVKATNSMIDTHLVALQGQPLVLECAEGFPTTIKSVMPRVTYQNHNKTLQLLKVGEEDDGEYRCLAENSLGSARHAYYVTVEA : BSPBLAGEN

             : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171----- :
OrigSeq      : KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA :OrigSeq
cons         : -EEEEE----EEEEE--------EEEEE----EEEEEE---EEEE-----------------------EEEEE-------EEEEEE-----EEEEEEEEEE----EEE----EEEEEEE--------EEEE-----EE----EEEEEEE------EEEEEEE-----EEEEEEEEEE- :cons
dsc          : -EEEEE----EEEEE-------EEEEEEE---EEEEEE---EEEEE----EEEEEE-----------EEEEEEEE------EEEEE------EEEEEEEEE----EEEEE--EEEEEEE-------EEEEE-----EEE--EEEEEEEEEE----EEEEEEE-----EEEEEEEEE-- :dsc
mul          : EEEEE------EE----------EEE-------EEEE-----EE------HH-H-H------------E-HHH--------EEEHHH----HHHHHHHEE------EEE----EEEEE--------------------------------------EEEEEE-----HHHHEEEEEE- :mul
nnssp        : EEEEE-----EEEEE--------EEEEE-----EEEE-----EE------------------------EEEE--------EEEEEE-----EEEEEEEEE-------------EEEEEE--------EEEE-----------EEEEEEE------EEEEEEE-------EEEEEEEE- :nnssp
phd          : --EEEE----EEEEE--------EEEE-----EEEEEE--EEEEE-------------HHHH------EEEEE--E----EEEEEE-----EEEEEEEEEE----EEE---EEEEEEEE--------EEEE-----EE----EEEEEE--------EEEEEE----EEEEEEEEEEE- :phd
pred         : -----------EEEE--------EEEEEE---EEEEE-----EEE-----------------------EEE----------EEEEEHHHHHHHHHHHHH--------------EEEEEE--------EEE------------------EEE------EEEEE----HHHHHHHHH--- :pred
zpred        : HEEEEH----EEEHHHHHHH-------------EEEE-----EE------EEHHHH-----------EEEHEHEE------EHHHHHHHHHHHHHHHHH-------EEE---EEEEEEE--------EEEE------------EEEEEEE-------EEEEE------HHHHHHEEHH :zpred

access       : EE-BEEEEEEBBEBEBEEEEEE-BEBEBEE-EEBEBBEEEBEBB-EEEEEB-EE-EEEE-BEEEE-BEBBBEEBEBEEEEEBBBEBEEEEEEBEBBBBEBBBE-EBEBBEEEEBEB-BEB-EE-EEEBEBE-EE-E--EEEEEBEB-EBE-EEEEEBEBBBEEEEEEB-BEB-BBBEE : access

PHD Rel      : 9188734885377613334355414522576514675143245416875422233441221137977266521012478416887448864267888776325312211241468998558998885476368763232775477631123589714799833663135678888828 : PHD Rel
Pred Rel     : 0057008999670878989797735585767759988799978978899876577797776669999655665568799979096567879899708755789999065687656809099990990070099998777997666575566799996698865778677557660000 : Predator Rel

dssp         : -EEEEEE----EEE--E--------EEEEE----EEEEEE--EEE---------EE--HHHHHH-E--EEE----HHH-EEEEEEE--EEEEEEEEEEEEEE-----EE----EEEEEE-------EEE-E-------EE--EEEE----HHH-EE-EEEEEE--EEEEE--EE-EE- :dssp
define       : EEEEEE---EEEEEEEEEE-------EEEE-----------EEEEEEE----------------EEEEEEEE-------EEEEEE--EEEEEEEEEEEEEE----------EEEEEEEEE-----EEEEE----EEEEEE------EEEE----EEEEEEEEE---EEEEEEEEEEEE :define
stride       : -EEEEEE--E-EEE--E--------EEEE-----EEEEEE--EEEE--------EE--HHHHHH-E--EEE--E-HHH-EEEEEEE--EEEEEEEEEEEEEE-----E---E-EEEEEE-------EEEEE-------EE--EEEE--E-HHH-EEEEEEEEE--EEEEEEEEE-E-- :stride

Q3 values for 3cd4  View SS in Rasmol

	dssp	define	stride
phd	69.10	66.29	70.22
dsc	63.48	65.17	66.85
pred	56.74	56.18	56.74
mul	55.62	52.25	52.81
nnssp	68.54	69.66	69.66
zpred	47.19	50.56	46.63
cons	68.54	70.79	69.66