Results for 3gapa


3gapa        : VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGT : NTCA_SYNP7
NTCA_SYNP7   : .LLTMRELGSGKLPLQIEQFER...GKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKITVFNPV : AVICYDR
AVICYDR      : LCLPILNFEDIDALNEIVKRGKIKKGEFLFRQGDAFGSVFAVRSGSLKTFSVSDNGEEQITGFHLPSELVGLSGMDS..DSCPVSAQALETTSVCEIPFERLDELALQLPQLRRQLMRVMSREIRDDQQMMLLLSKKTADERIATFLINLSSRFRARGFSANHFRLAMRNEIGNYLGLAVETVSRVFSRFQQNELIAAEGKVTILNPV : FNR_HAEIN
FNR_HAEIN    : LCIPFLNEQELDQLDNIIERKKIQKSQVLFKAGDSLNSIYAIRSGTIKSYTISESGEEQITSFHLPGDLVGFDAITQ..MQHPSFAQALETAMVCEIPFDILDDLAGKMPKLRQQILRLMSSEIKSDQEMILLLSKMNAEERLAAFIHNLSKRYSARGFSAREFRLTMRGDIGNYLGLTVETISRLLGRFQKLGVISVQGKITINDLN : XANCLP
XANCLP       : ATPSLLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIE.DTHEVILRTRTQCELAEISYERLQQLFQTAPRILYAIGVQLSKRLLDTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGT : FNR_ECOLI
FNR_ECOLI    : LCIPFLNEHELDQLDNIIERKKIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGS..GHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMRGDIGNYLGLTVETISRLLGRFQKSGMLAVKGKITIENND : A56276
A56276       : ..IANLLSPDGETFFRGFRSKIAKGSLVCTGEGDENG.VFVVVDGRLRVYLVGEE.REISLFYLTSGDMFCMHSG........CLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRYTIPNLV : RSU62403
RSU62403     : LPPFSLDRPQIRTILDQATSRRYDEGSTVFGEGMAADRFYLLLDGTIRVVRTTPTGEQIIALHIGPGQLFGIAPALAR.DTYPATAVAAAECVTLSWPVRLWGDFVASYPGFATESNRTLGARLGEMQNRITELATQQVEQRVAACLLRMVNQSGRKVATGIEISFPIRQNISEMTGTTLHTVSRLLSAWEREGIVESTRRIVVTAPH : BTR_BORPE
BTR_BORPE    : VCVPVCLPTKSRNWTNSSRRPCWSAAKRSTNS.TIPWSRLRVRFGSLKTQLEDSSGQLQITGFHLPGEIVGLVGMIES..KHVSSAVALEDSEVCVIRLPEIDRVSTQLPSLQQQFRRLMSREITRSHQMLATVGAMRSEQRLAAFLLNLSQATRRSAIRRPNSCVRMREEIGNYLGLTLETVSRLFSRFGREGLIRINQAVRLIDLP : ETRA_SHEPU
ETRA_SHEPU   : LCMPFLNANELDQLDDIIERKKIQKGEQIFKSGDLLKSLFAIPSGTIKSYTITEQGDEQITGFHLAGDVIGFDGIHA..QSHQSFAQALETSMVCEIPFNILDELSGTMPKLRQQIMRLMSNEIMSDQEMILLLSKKNAEERLAAFISNLANRFGNRGFSAKEFRLTMRGDIGNYLGLTVETISRLLGRFQKSGLIEVKGKIIIVDHH : JH0364
JH0364       : .....................................KLFLVTSGYFKVEQSDQSGTFMYTDFIRHGTIFPYGGLFTD.DYYHFSVVAMTDVTYFYFPVDLFEDYSLENRLQMKHLYSKMSKLLELHELRVRNLITSSASSRVIQSLAILLVEMGK...DSDTLPFQLTTDIAQISGTTREIVSHVLRDLKKQELITIKGKLTYLDKD : FNRL_RHOSH
FNRL_RHOSH   : RAVCACDSEELATLEQIKYYRSYQAGQTVIWSGDKMDFVASVVTGIATLTQTMEDGRRQMVGLLLPSDFVGRPGR....QTVAYDVTATTDLLMCCFRRKPFEEMMQKTPHVGQRLLEMTLDELDAAREWMLLLGRKTAREKIASLLAIIARRDAALKLRESNFDLPLREEMADYLGLTLETVSRQVSALKRDGVIALEGKVIVTDFA : PDU343531
PDU343531    : RAVCACEGDELTELEEMKFYRRYEAGQVVVWAGDRMDFVARWSPALAGLTQQLEDGRTQMVGLLLPSDFLGRPGR....DMAAYTVTATSDLVLCCFRRKPFEKLLIDNPRIASRLLEMTLDELDAARDWLLLLGRKSAREKIASLLVILARREAALIKRRPEIELPLREAMADYLGLTLETVSRQMSALKREGVIELDGKVIVPSFV : AADR_RHOPA
AADR_RHOPA   : LAICGLGPADHEEFERLAQHVRYGPKEALFSEDEVADSVYSLIEGIARLYKLLPDGRRQIIGFALPGDFLGMAPG....NRYSFSADSIGGVTVCKFFRGPFLRFIENRPQMLLRMNDFATRELSLAQDQMLLLGRRSAEEKVAAFLVGWRDRLARLEGVTKTVSLPMRQDIADFLGLTIETVSRTFTKLEREKLIVIVPDVRVLDPK : FIXK_AZOCA
FIXK_AZOCA   : ARGVADESARPAQVVAALGTPAFARNSEIFGDDQVAENVYVVVSGVVRICKLMGDGRRQIEAFCLPGDAFGWETG....ERYRFSAEAVSECRLVRVKRSVLFARAGSDPELACALWALSFAELQRAQEHLLLLGRKTAQERVGSFLLDLARRSGTTNASHVTVTLAMRQDIADFLGLTIETVSRTLTYLEEQGTISLPSSVLLRDRS : FIXK_RHIME
FIXK_RHIME   : ..IEVHLGPAPMSGPRLVATYK..PGREIYAQGDLNDKCYQVSTGAVRIYRLLSDGRRQVVSFHLPGEMFGFEAG....SNHSFFAEAITETTLAIFGRRNMQERSRE.......LLALALTGMARAQQHLLVIGRQCAVERIAAFLVDLCER..Q..GGGRQLRLPMRQDIADYLGLTIETVSRVVTKLKERSLIALRDAIDIMKPE : RLFIXKLN1
RLFIXKLN1    : EMTEEIHAGQSLSALFLTSATEVPAGRAVCWEGDEAKHLFQLVEGVIRLYRIVGDGRRVITAFQFAGDLIGASLQG....DFLFTAEAVTECKIRRVSRKSFDDEVAPVGCSSHRIHLPALRETAAAQEQMVLLSKKNAEERLCSFIAKLASR.RNLQARQSVLRVPMRQDIADHLGLTIETVSRTLTKLASRNVVIPEGRLRIVNLA : S28677
S28677       : AAVPFAEKQDLSSLFDAQPVERFTPAAAVFWEGDQARHIFEVVEGTLRAVRILNDGRRVIIGFLRPGDLLGVSVK....EHYLYTVEAITHVELRRFSRRRFESESARAPHLREQLFSRLCDEMAAAQDQMVLLSRRSAEEKVAGFLLMMAR..GQSENRRPVIELPMRLDVADYLGMTIETVSRTITKLAGSGVIAIVGRIAILKMD : VFR_PSEAE
VFR_PSEAE    : VAITHPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGT : PASCRP
PASCRP       : VTPPPIHDPAVEWFLTHCHIHRYPAKYTLIHAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEVQQRTAYVRTKGPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQTLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIIKMLEDEGLISAHGKTIVVYGA : FNR_BACSU
FNR_BACSU    : ..SDSLISSDLYELLESISTKRMEKHTYLFREGMDAEELYLIQSGLIEIGKLTSDGKDLTLRICQKHDIVGELTLFTE.PRYMLSAKVLEDGEVLVINKNKLEKELIQNGALTFEFMKWMSTHLRKIQSKIRDLLLHGKKGALYSTLIRLSNSYGVERSDGILINIVLNQDLAKFCAAARESVNRMLGDLRKKGVISIDESIILHKRD : ASU21853
ASU21853     : ..LLSATPQTLEWLLNIAIDHEYPTGRAVLMEDAWGNAVYFVVSGWVKVRRTCGD.DSVALAILGRGDFFGEMAILDE.SPRSTDVIALSPVKLLSISRERFIQILFKDPQLHHRMLQLMVRRLRQINQRLQIRSSPPAV.KLAHTLVSLGESYGQESTQGRE.ILNIFKDLAEVTEIGVEETSKIMDKLHDKGWIKIDSTIYLINFK : D90912116
D90912116    : IPFFELRLEVLQEAIAHVSVRSHPANQVILLEHDWGGSVYFVMDGWVKIRTHNVDGREVTLNIVGRGEIVGEMAAIEE.APRSTDVITLTPAEVCSVPAPEFYNFLQTEPMAGIRLAQIIARRLRQLNRRLRLREAESLT.RVADTLLFLAEG.RGRDTDKGVIIPNLHRELSSISGLARETVTRCLTKLEKRGLIHREPDISVANLR : D90904112
D90904112    : ISFFRISKDLLIANINYLSFRNYPCSQSILFDNYYGGSIYFIAEGWIKVCAIGESSKNSIYTIYGPDEIVGAIAAVEE.DWNPKEAVTLTPAKIWSIPTQDFLNLLREDPQAGIQVAIFASKRLRRLNQYFRLRESDSVT.KVAHILLELVGHGKKTISTKKHLIPNLHRETAMLSGVTRETVTRTLGKLEKKGLILRQGAIEILNLD : D9091749
D9091749     : TLMFQIDSHHLEMITAIAQVKSYGKGDVVFKEGDKPKGFFIVRSGRVKIYKIAPGGKEQILRIFHRGEHFAEIAVFDN.LPFPASAATLDQAEMIFFPRSPFLEMLAQHPTLALNMLSSLSRHLRHLTAVIEELSFKDVPQRLASYLLRLGGVDTGTVEVLSLVTLDLKSQLAAQLGTIPATLSRAFYQLKNEDLIAVKGAIQLLDCD : TFU730411
TFU730411    : TEIFSWSDEDLSHLFKGARVLEMSVGQILFLEGDAATAFYFLLDGQVKLVTSAADGHEKIVDILQGGDLFCRSCSFFGISLSRAGNSGHARPGSGNSPYDNFLVTLQQHQELMLQMLGELSLRLRHLIMELRHLTVESADQRVAGYLLELCPS....GNSPVSLLLPAKAMIAARLGLTPETFSRVLKRLREEHLIAVEKLIYIHRPS : S66482
S66482       : HHLFELSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMD.PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPG...ENCRVEIPVKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGRISILDRE : S69005
S69005       : SVLLNLTPEMRDKLLKDAQRRSYREGETIFLQGDPARAVFIVLNGFIKLSRLTPNGSEAVVAILGRNRSFAEAMVLRG.TPYPVSAEAISDCTVLQIDGARLRQFLLENQEFAIGLLASTFVHLQGLVDQIERLKAHTGVQRVAQFLADLSDAVAG..PAEVR..LPYKRLIAGHLGMQPESLSRAFARLRNDGVEIEADKAMIADIA : FLP_LACCA
FLP_LACCA    : ..LFKLNDEARAAIDALTHERQ.VEKGTVLISPDTAAHLLVVAHGKLKTYQLATNGKEQLLRVDGVGDYEGEAGLLN.IANPNVYTETLTAATVCTISATDFQQLLLKQPQISLQLLTENARKMQALEKQAGYLGNDSINVRLTHYLLDLRTAAG.....QDTVTVPMWTQLADYLGTTPETVSRTLKRLAEEKLIERSGKVRILNAE : D90917109
D90917109    : VVEHKLESHELVDYLAHSEVMNLPPREVLCREGDQGDYFYFIGGGEADVYKGTTW....VN.RLTSGDIFGEMSLLTG.EPRSATVVAVTPMELYQLDKENFANILSQSPHLALALSRKLARRLQSARQMLAKLAQSSAPMLVGTLFDNIPEAMVIGMNTNVTVFISNPEALSSSFGMKQAGISRILTLWFASGLIAMVGYGTLLLVA : DDIMYLCE

             : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201----- :
OrigSeq      : VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGT :OrigSeq
cons         : --------HHHHHHHHHHH-------EEEEE------EEEEEE---EEEEEE------EEEEE------EE--E---------HEEEE----EEEEE---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------EEEEHHHHHHHHHH---HHHHHHHHHHHHH--EEEE--EEEEE--- :cons
dsc          : ----------HHHHHHHH--------EEEE------HHEEEE----EEEEE-------EEEEE----------HH---------EEEE------HH----HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----------EEEEHHHHHHHHH-----HHHHHHHHHHHH--EEE----EEE---- :dsc
mul          : ----------HHHHHHHHH-------EEEEE------HEEEEE---EEEEE-------HEEEE--------HH-H---------HHHHHH-HHEEEH--H-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----------EEEEH-H-HHHHH-----H-HHHHHHHHH--HH-HH---EEEEE-- :mul
nnssp        : EE-----HHHHHHHHHHHH--------EEEE------EEEEEE---EEEEEE------EEEEE------EE---------HHHHHHHH-----EEEE-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------EEEHHHHHHHHHHH---HHHHHHHHHHHHH--EEEE--EEEEE--- :nnssp
phd          : --------HHHHHHHHHHH-------EEEEE------EEEEEEEEEEEEEEE-----EEEEEEE----EEEEEE---------EEEEEE--EEEEEE---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----------EEEEHHHHHHHHHH---HHHHHHHHHHHH---EEEEE-EEEEEE-- :phd
pred         : ---------HHHHHHHHHH-------EEEEE------EEEEE----EEEEEE------EEEEE--------------------HHHHHH---EEEE--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------EEEE--HHHHHHHH---HHHHHHHHHHHHHHHEEE-----EEE--- :pred
zpred        : EEE------HHHHHHHHHH--------EEEE-----HHEEEEEHHHEEEEEE-----HEEEEE------EEHH-----------HHHHHHHHHHEEHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------EEEEHHHHHHEE---EEEEHHHHHHHHHHHHHHHHH-EEEEEE-- :zpred


access       : EE-EEBEEEEBEEBBEBBE-EE-EEEEBBBEEEEEBEBBBBBBEBBBEBBEB-EEEEEBBBBBBBEEEBBBBBBBBEE-EE-BBBBEBBEEBEBBEB--E-BEEBBEE-EEBBBEBBBEBBEEBEEBEE-BBBBBEEEBEEEBBBBBBEBBEE-EEEEEEE--BBBEBEEEBBEBBEBB-EBBBEBBEEBEEEEBBBBEBEBBBBEEE : access

PHD Rel      : 9511467326889998641344556438886167531689886314789983258845899873364111244225776433112333112257752320478875156279999998888888988999998504526899999999985245787667633665247899986344258999999875146447752158987289 : PHD Rel
Pred Rel     : 0008999776888788865566979877886799776588976696669996878775569967898876655665589996877778566677776766888888857768889999999999999999979885567699999999888699888889877755578888888866588788999898767656657776555000 : Predator Rel


dssp         : --------HHHHHHH-----E-------------E--EEEE--E-EEEEEE-------EEEEEEE---EE----------E---E-------EE--EEHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------------------HHHHHHH----HHHHHHHHHH-------E-----E----- :dssp
define       : -------HHHHHHHHHHH---------------------EEEE---EEEEEEEEEEEE---------EEEE-----------EEEEEE---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----------------HHHHHHHHHH-HHHHHHHHHHHHHHHHEEEE--EEEE---- :define
stride       : --------HHHHHHHH----EEE---EEEE---EEE-EEEEE-E--EEEEE-------EEEEEE---EEE---------EEE--EEEE---EEE-EEEHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-------------EEE---HHHHHHHH---HHHHHHHHHHH-------E---EEE---- :stride


Q3 values for 3gapa  View SS in Rasmol

	dssp	define	stride
phd	71.63	72.60	77.40
dsc	71.63	73.08	75.00
pred	72.60	74.52	75.00
mul	65.87	63.46	69.71
nnssp	68.75	76.44	72.60
zpred	61.54	64.90	62.98
cons	71.15	77.40	76.92