Results for 3pgm


3pgm         : PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKGVNVLVDYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAQTLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKLVGKTSMIAAHGNSLRGLVKHLEGISDADIAKLNIPPGTILVFELDENLKPSKPSYYLDPEA : PMGB_RAT
PMGB_RAT     : YKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDIVFTSVQKRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNIDRRYAD....QLPSCESLKDTIARALPFWNEEIVIKEGKGVLIPAHGNSYGGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMSLGDEET : PMGY_MYCTU
PMGY_MYCTU   : GSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIG..GGPLTECLADVVARFLPYFTDVIVLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGTYLDPEA : PMGE_MOUSE
PMGE_MOUSE   : HKLIILRHGEGQWNKENRFCSWVDQKLNNDGLEEARNCGRQLKALNFEFDLVFTSILNRSIHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREKMALNHGEEQVRLWRRSYNVTPPPIEESHPYFHEIDRRYKVCDVPQLPRSESLKDVLERLLPYWKERIAILKGKSILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDENLRAVGPHFLGNQEA : S52498
S52498       : MTLFLLRHGQSELNHENIFCGWIDAKLTEKGKEQARHSAELIEQYCRLPQIGYTSRLIRTQQTIETMCEEFKLKKIPILQTWRLNERHYGSWQGQRKPNVLKEYGKDKYMFIRRDYEGKPPPVDLDREMIQQEEPRQIKYELEVLPDSESLREVVYRLNPFLQNVILQYDESSCLIVGHGSSVRSLLKILEGISDDDIKNVDIPNGIPLVVELDKNNGLKFIRFYLDPES : S61723
S61723       : FKLFILRHGQSELNSENIFCGWIDAQLTEKGKSQARHSAKLIKQFCSLPQIGYTSRLIRTQQTMDVILEELGLKSMPVLQTWRLNERHYGAWQGQRKPDILKEYGKEKYMYIRRDYNGKPPKVNLNLEMVQEEEPRHLKYGPERLPESESLCEVVVRLKPFLNNVVLKISQESCVIVGHGSSVRSLLKVLEGISDEDIKDVDIPNGIPLVIELDRDN.YSFVRFYLDPES : PMGY_STRCO
PMGY_STRCO   : YKLILLRHGESEWNEKNLFTGWVDVNLTPKGEKEATRGGELLKDAGLLPDVVHTSVQKRAIRTAQLALEAADRHWIPVHRHWRLNERHYGALQGKDKAQTLAEFGEEQFMLWRRSYDTPPPALDRDAEYSQFSDPRYAMLPPELRPQTECLKDVVGRMLPYWFDAIVLLTGRTVLVAAHGNSLRALVKHLDGISDADIAGLNIPTGIPLSYELNAEFKPLNPGTYLDPDA : S50326
S50326       : YKIVMVRHGESEWNQENQFCGWYDANLSEKGQEEALAARKAVKDAGLEFDVAHTSVLTRAQVTLASILKPVATRRSPIQKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDTPPPPMEPGHPYYENIDPRYAEG...EFPQFESLKLTIERTLPYWNDVIIMKEGKRILIAAHGNSLRGIVKHLDNLSEDAIMALNLPTGIPFVYELDENFKPVVSMFLGDEET : PMGY_SCHPO
PMGY_SCHPO   : NLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSYDIAP.....................PN.....ESLKDTAERVLPYYKSTIVILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKDGKYVS.KLIDN... : PMGY_ZYMMO
PMGY_ZYMMO   : PTLVLSRHGQSEWNLENRFTGWWDVNLTEQGVQEATAGGKALAEKGFEFDIAFTSVLTRAIKTTNLILEAGKTLWVPTEKDWRLNERHYGGLTGLNKAETAAKHGEEQVHIWRRSYDVPPPPMEKGSKFDLSGDRRYDGVK...IPETESLKDTVARVLPYWEERIALKAGKRVLIGAHGNSLRALVKHLSKLSDEEIVKFELPTGQPLVYELNDDLTPKD.RFLNER.. : PMG_HAEIN
PMG_HAEIN    : MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKTAGKKLLDKGYEFDIAFTSVLTRAIKTCNIVLEESHQLWIPQVKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANIPSD.VPNAENLKLTLERALPFWEDQIAMLSGKRVLVVAHGNSLRALAKHIIGISDAEIMDFEIPTGQPLVLKLDDKLNYVE.HYL..... : PMG1_ECOLI
PMG1_ECOLI   : TKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDENFKPLK.RYLGNADE : TPU552146
TPU552146    : MKLVLIRHGESEWNRLNLFTGWTDVPLTPRGESEAQEGGRVLQEAGFDFDLCYTSFLKRAIRTLNFVLQALDREWLPVHKSWKLNERHYGDLQGLNKTETAQKYGEQQVRVWRRSFDVAPPPLTVGDARCPHTQASYRGVCASVLPFTESLKDTVARVVPYFEEEIKMISGQRVLIVAHGNSLRALMKHIESLDETQIMEVNLPTGVPLVYEFEADFTLCG.KFLGNEAD : PMG2_ECOLI
PMG2_ECOLI   : LQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAKELG..ITHIISSDLGRTRRTAEIIAQACGCDIIFDSRLRELN.......MGVLEKRHIDSLTEEE.ENWRRQLVNGTVDG....................RIPEGESMQELSDRVNAALESCRDLPQGSRPLLLSHGIALGCLVSTILGLPAWAERRLRLRNCSISRVDYQESLWLAS.GVVETAGD : LDMOFA
LDMOFA       : .......HGETDWNRIRRFQGQLDVPLNPLGQLQAERLVQALAGQT..FDAVICSDLARVX.TAAPWLAASGQAVRAEA.AWREQ..HYGVFEGQD...VAT.LRREQPELWRRYAEHRADWAP.....................PQGETTAAFFARVQAAWAALRQAHPGQRVLLFTHGGVLDMLWRAVQRLPLDGARACAIPAGVNXLRQAGDGLQIVAWATLAGLPE : S67185
S67185       : IRLFIIRHGQTEHNVKKILQGHKDTSINPTGEEQATKLGHYLRSRGIHFDKVVSSDLKRCRQTTALVLKHSKQENVPTSYTSGLRERYMGVIEGMQIT.EAEKYADKHGEGSFRNFG...............................EKSDDFVARLTGCVEEEVANEGVKNLALVSHGGAIRMILQWLKYENHQAHKIIVFNTSVTIVDYVKDSKQFIVRR.VGNTQH : SYCSLRD32
SYCSLRD32    : LNLYFLRHGETTSSQTGTFCGRLDIDLTSHGYQMAHQFAEAYKDVS..WTAIFASPLHRTMATATPLSKLIN...LPIQKRDGLKEIAYGEWEGKTPAEVNQQFHDDYVR.WLADPGWNAPSG........................GEKGIDIARRSSEVLEEIERTFTTGNVLVVSHKSTIRIMLCSLLGIDIGRFRDRIGMVAAVSIVTMSEHGPLIEVM.D..RSH : PGK_HALVA

             : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221------- :
OrigSeq      : PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKGVNVLVDYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAQTLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKLVGKTSMIAAHGNSLRGLVKHLEGISDADIAKLNIPPGTILVFELDENLKPSKPSYYLDPEA :OrigSeq
cons         : -EEEEE------HHHHHHH------------HHHHHHHHHHHHH-----EEEEHHHHHHHHHHHHHHHHHH------------H------HH-----HHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHH----EEEEEE---HHHHHHHHHH---HHHEEEE------EEEEE------------------ :cons
dsc          : ----HHHH----HHHHHHH---------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----HHHHHHHHHH---HHHHHH--------EEE------------------- :dsc
mul          : -HEEEEE-------------------------HHHHHHHHHHHH----HEE-HHHHHHHHHHHHHHHHHHH------------H--------------HHHHH--HHH-H--------------------------------------HHHHHHHHHHH---HHHHEEH---EEEEEE-----HHHHHHHHHH--H-HHHH------EEEEHH----H--E--------- :mul
nnssp        : -EEEEEE------------------------HHHHHHHHHHHHH------EEEEHHHHHHHHHHHHHHHHH--------------------------HHHHHHH-HHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHH----EEEEEE----HHHHHHHHH-----------------EEE------------------- :nnssp
phd          : -EEEEE------HHHHHHH------------HHHHHHHHHHHHH-----EEEE--HHHHHHHHHHHHHHHH------------HHHHHHHHH-----HHHHHHHHHHHHHHHH------------------------EE-------HHHHHHHHHHHHHHHHHHHHHE----EEEEEE---HHHHHHHHHH---HHHEEEE------EEEEE----------EE------ :phd
pred         : ---EEE------------------------HHHHHHHHHHHHHH----EEEEEHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHH--HHHHHHHH----------------------------------HHHHHHHHHHHHH-----------EEEEEE----HHHHHHHHH-------EEE------EEEEEE----------------- :pred
zpred        : HHEEEEE-----------------------HHHHHHHHHHHHHHH---EEEEEHHHHHEEEEEEEHHHHHHH--------------------HHH--HHHHHHHHHHHHH-------------------------------------HHHHHHHHHEE---HHHHHHHH--HHEEEEEH---HHHHEEEEHHHHHHHHHEEE----EEEEEEHHH-----EE-------- :zpred


access       : EEBBBBEEEEEE-EEEEBBEB-BEBEBEEEEEEEBEEBBEBBEE-BB-BEBBBBBBB-EBBEBBBBBBEBBEEEBBEBBEB-EBEEEBBEBBEE-EEEEBBEE-EEE-BEBB--B-E-E-EE-EEE-E-BEE-EEE-BEB--EEBEE-EEBEEBBBEBBE-BEEBBBB-E-EEBBBBBBBEBBEBBBEBBEEBEEE-BBEBBB-EBBBBBBEBEEEBE-BBBBBB-EEEE : access

PHD Rel      : 91777518854211443321323344464534678899999985266531453112233467889999872444443212231334444212134404678876555665432135788887688877665456531104877652145678999987666777752016745888726514789999874144244134226877235664143665222112235799 : PHD Rel
Pred Rel     : 00800656997767556655677888776708789909089786799755666555888888889977877766065667066865766666677769999996977878798766800009999997976999987679999888777687989980866677706866765900968997889999976699767769509999876996578998877877778000 : Predator Rel


dssp         : ---EE-E------HHHH-----------HHHHHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHHHH-------EEE-----------------HHHHH---HHHHH------------------------------------------HHHHHHHHHHH-HHHH----EEE-----HHHHHHHHH--------------E---EE-------------E------ :dssp
define       : EEEEEEE----------------EEEEEHHHHHHHHHHHHHHHH-EEEEEE------HHHHHHHHHHHHHH----EEEEEE------EEEEEEE----HHHHHH------------------------EEEEEHHHHHHH----EEEEEEEHHHHHH-HHHHHH---------EEEEE--HHHHHHHHHHH-----------------EEEE------------------ :define
stride       : --EEEEE---------------------HHHHHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHHHH-------EEE-----------------HHHHHH-HHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHH---EEE----HHHHHHHHHH--------------E-EEEE-------------E------ :stride


Q3 values for 3pgm  View SS in Rasmol

	dssp	define	stride
phd	73.04	61.74	73.48
dsc	71.74	54.78	70.87
pred	76.96	66.52	78.26
mul	74.35	63.91	77.39
nnssp	83.91	69.57	86.96
zpred	65.22	54.78	70.00
cons	76.96	63.04	77.39