Results for 1asw-1-AUTO.1


1asw-1-AUTO.1    : REPRGLGPLQIWQTDFTLEPRAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAVERANRLLKDKIRVLAEGDGFKRIPTSKQGELLAKAYALNHFER : POL_IPMA
POL_IPMA         : INPRGIRPLQVWQMDVTHVSSGKLQYLHVSIDTCSGIMFASPLTGEKASHVIQHCLEAWSAWGKPRLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGGIVERAHRTLKTYLIKQKRELEEIP.QH...QESLSMALTLNFLNI : POL_SRV2
POL_SRV2         : VNPKGLVPNMLWQMDVTHYSEGKLKYVHVSIDTFSGFLVATLQTGEATKHVIAHLLHCFSIIGQPIHIKTDNGPGYTSSNFRAFCSKLHIKHTFGIPYNPQGGIVERAHLSLKNTLEKIKKGEWYPQGSP...RNILNHALILNFLNL : JQ1162
JQ1162           : SNKRGIDH...WQVDYTHFED...KILLVWVETNSGLIYAERVKGETGQEFRVTTMRWYALFA.PKSLQSDYGPAFIAEATQLLMTYLGVEHTTGIPWNPQSALVERAHQTLKKTIEKLVPMFSAFSRVAAALIALNIKRKGRGTSPM : HERVKPOL
HERVKPOL         : VNPRGLCPNALWQMDVTHVPSGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIKTDNGPGYCSKAFQKFLSQWKISHTTGIPYNS................................................ : EIAPOLENV
EIAPOLENV        : ....MRSPN.HWQADCTHLDN...KIILTFVESNSGYIHATLLSKENALCTSLAILEWARLFS.PKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESGIVERANRTLKEKIQSHRDNTQTLA........ALQLALTCNKGRE : REMMTVEN
REMMTVEN         : VNPRGLKPRVLWQMDVTHVSEGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGIPQKIKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGAIVERTHQNIKAQLNKLQKAGKYYP......HHLLAHALVLNHVNM : POL_HTLV2
POL_HTLV2        : YIRRGLLPNHIWQGDVTHYKYKYKYCLHVWVDTFSGAVSVSCKKKETSCETISAVLQAISLLGKPLHINTDNGPAFLSQEFQEFCTSYRIKHSTHIPYNPTSGLVERTNGVIKNLLNKYLLDCPNLLD......NAIHKALTLNQLNV : S83529
S83529           : TIQRGWAPNHIWQADVTHYKYQFTYALHVFVTDYSGATHASAKRGLTTQMTIEGLLEAIVHLGRPKKLNTDQGANYTSKTFVRFCQQFGVSLSHHVPYNPTSGLVERTNGLLKLLLSKYHLDEPHLMT......QALSRALTH..... : S745622
S745622          : HIRRGLLPNHIWQGDITHFKYNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAYLGKPNYINTDNGPAYISQDFLNTCTSLAIRHTTHVPYNPTSGLVERSNGILKTLLYKYFTDKPDLMD......NALSIALTINHLNV : PN0443
PN0443           : VNPRGLEPNQIWQTDFTMYPPRPNHWLAVTVDTYSGVIVATAHRGTKSRHAIHHWTAAIAYLGRPSVIKTDNGSAFTSKAATAWAQRWHITLKHGIAYNSQGAIVERANRTLKARLEALGEGEGWGRVPPEHQPELLYRALSMNFFAR : POL_BIV27
POL_BIV27        : TNPRGR...FLWQMDNTHWNK...TIIWVAVETNSGLVEAQVIPEETALQVALCILQLIQRYT.VLHLHSDNGPCFTAHRIENLCKYLGITKTTGIPYNPQSGVVERAHRDLKDRLAAYQGDCETVA........ALSLALSLNKKRG : POL_JSRV
POL_JSRV         : VNPRGLRPNHLWQTDVTHIPQGRLKYVHVSIDTFSNFLMASLHTGESTRHCIQHLLFCFSTSGIPQTLKTDNGPGYTSRSFQRFCLSFQIHHKTGIPYNPQGGIVERAHQRIKHQLLKQKKGNELYPS.P...HNALNHALVLNFLTL : POL_CAEVC
POL_CAEVC        : GNKRGVNH...WQVDYTHYEN...IILLVWVETNSGLIYAEKVKGESGQEFRIKVMHWYALFG.PESLQSDNGPAFAAEPTQLLMQYLGVKHTTGIPWNPQSAIVERAHQLLKSTLKKFQPQFVAVSAIAAALVAINIKRKGLGTSPM : A44282
A44282           : HQARGFAPAQDWQIDFTHMPRRKLKYLSLGRHFHWMGRGLPHRVXKATAVISSLLSDIIPRFGLPTSIQSDNGPAFTSQITQAVSQALGIQWKLHIPYHPQSGKVERTNGLLKPHLTKLSLQLKKDT.......VLLPLALRIRACPR : STLVPH9692
STLVPH9692       : YIRRGHAPNITWQGDVTHLQYRYKYCLLVWVDTYSGAVSVSCRRKETGSDCVASLLAAISILGKPHSINTDNGAAYLSQEFQQFCSSLSIKHSTHIPYNPTSGLVERTNGILKTLVSKYLLDNHHLLE......TAISKSLTINHLNI : STU905571
STU905571        : HIRRGLLPNHIWQGDVTHYKYRHRYCLHVWVDTFSNAVSITCKTKETSSETVSALLHAITILGKPLSINTDNGSAFLSQEFQAFCTSWHIRHSTHVPYNPTSGLVERTNGIVKALLNKYLLDSPNLLD......NAISKSLTLNQLNV : S15471
S15471           : VNPRGIAPLDVWQTDFTLEPRAPRSWLAVTVDTASTVIVATQHGRANSSAAQHHWSVCVATLGLPSHIKTDNGSCFISRSTKEWLARWGITHSTGIPGNSQGAIVERANRLLKEKLRVLGEGENYRKIPVSQQGELLARALALYHFDR : I59506
I59506           : VNPRGLCPNALWQMDVTHVPSGKSSFVHVTVDSYLHVVWAPARQEKVLPMLKDIYYLVLLSWVVQKKIKTRNGPGYCSKTILKIVKSDKFTHTTGIPYNSQGAIIERTNRTLKAELVK.............................. : POL_SMRVH
POL_SMRVH        : VNPRGLVPNAIWQMDVTHFTPGKQRFVHVTVDTFSGFILATPQTGEASKNVISHVIHCLATIGKPHTIKTDNGPGYTGKNFQDFCQKLQIKHVTGIPYNPQGGVVERAHQTLKNALNRLARSPLGFMQQP...RNLLSHALQLNFLQL : STU855061
STU855061        : VNPRGLIPNEIWQMDVTHHSEGQLKYIHVCIDTYSGFIIATLQTGEATKHVITHLLHCFSILGIPKQIKTDNGPGYIAKTFLQFCNTLQIKHITGIPYNPQGGIVERAHLSLKTTIEKIKGGS......................... : D40899
D40899           : INPHGIRPLQMWQMDVTHVASGKLQYVHVSVDTCSGIICATPLTGEKAAHVIQHCLEAWGAWGKPHILKTDNGPAYTSQKFQHFCRQMEITHLTGLPYNPQGGIVECAHRIAHLSLI............................... : YI61_XANCA
YI61_XANCA       : KLLASSMPNDTWSMDFVFDALNARKCLTVVDDFTRESVDIAVDHGISGAYVVRLLDQAACFRGYPRAVRTDNGPEFTSRAFIAWTQQHGIEHILIEPGAPTQAYIESFNGKFRDECLNEHWFTSLAAR......DVIADWRHYNQIRP : S18211
S18211           : EEVRTDRPFQKLYIDFLGKYPSKRAWIFVVVDHFSKFTFLKAMREATAADVVFLVHEVFFKFGVPEVIHSDNGRQFVSKSFDAMVQAFGITHLRTPVYSPQSNAAERVNRTVLSAIRTYLGQDHRED.......AYLPEVEAIRNAVH : CICOS417
CICOS417         : ASRNLIKAMRPWERLSMDFKGVKGSYLLIIVDEYSRFPFVFPCKRMTSAVVIQCLTNLFCLFGFPAYVHSDRGLSFISHEVKVFLTERGIATSKSTPYHPQGSQCERVNQTIWRTVKLLLHGKLMAEQ....WEEVLPQALAIRSLVC : CAFET3

                 : 50--------60--------70--------81--------91--------101-------111-------121-------131-------141-------151-------162-------172-------183-------194----- :
OrigSeq          : REPRGLGPLQIWQTDFTLEPRAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAVERANRLLKDKIRVLAEGDGFKRIPTSKQGELLAKAYALNHFER :OrigSeq
cons             : ---------------EE-------EEEEEEE-----EEEE--------HHHHHHHHHHHHH-----EEE--------HHHHHHHHHHHEEEEE----------HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH---- :cons
dsc              : --------------EEE-------EEEEEEE-----EEEE--------HHHHHHHHHHHHH----------------HHHHHHHHHHEEEEEE----------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH---- :dsc
mul              : -------------EEE--------EEEEEEE------EEE--------HHHHHHHHHHHE------------------HHHHHHHHHHH--------------EEHH--HHHHHHHHHHH-----HH-------HHHHHHHH------ :mul
nnssp            : -------------------------EEEEEE-----EEEE-------HHHHHHHHHHHHHH----------------HHHHHHHHHH----------------HHHHHHHHHHHHHHHHH----------HHHHHHHHHHH------- :nnssp
phd              : ---------------EEE-----EEEEEEEEE----EEEEE-------HHHHHHHHHHHHHH----EEE--------HHHHHHHHHHHEEEEE------------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH---- :phd
pred             : ------------------------EEEEEEE-----EEEE------HHHHHHHHHHHHHHH-----EEE--------HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH--- :pred
zpred            : -----------EEEEE---------EEEEEE------EEEE----HHHHHHHHHHHHHEE------EEEE-----EEEE-HHHHHHH--EEEE----------EEEHHHHHHHHHHH-------------------HHHHH------- :zpred


access           : EEEEBB-EEBBBEBEBBBBEEEEBBBBBBBBEBBBBBBBBBBEEEEBBEEBBBBBBBBBBBBB-EEBBEEEEBEEBBBEBBEEBBBBBBBEBBBBBE--EEEBBBE-BEEBBEEBBEEB-EEEE-BEE-BEEBBEBBBEBBBBE-BEE : access

PHD Rel          : 9978889886332112212787438999998423525888515766318999999999998578524562899743226899997653113114576688753103687799999999963776568872556899998776624699 : PHD Rel
Pred Rel         : 0090089997555555568896655898787788766676577776558878888887785699987808999977558889988885555666799999096657776889999999776999877899997689999996776000 : Predator Rel


dssp             : ----------EEEEEEEE-------EEEEEEE-----EEEEEE----HHHHHHHHHHHHHHH----EEE----HHHH-HHHHHHHHHH--EEE------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHH--------- :dssp
define           : ---------EEEEEEEEEEEE------------------------------------------------------------------------------------------------------------------------------- :define
stride           : ----------EEEEEEEE-------EEEEEEE-----EEEEEE----HHHHHHHHHHHHHHH----EEE----HHH--HHHHHHHHHH--EEE-----------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH----- :stride


Q3 values for 1asw-1-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	82.43	42.57	84.46
dsc	75.00	47.97	78.38
pred	74.32	43.92	77.70
mul	72.30	54.73	73.65
nnssp	77.70	50.00	78.38
zpred	73.65	52.70	72.97
cons	79.05	43.24	82.43