Results for 1dnpb-1-AUTO.1


1dnpb-1-AUTO.1    : TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLITYHP : PHR_YEAST
PHR_YEAST         : STVMHWFRNDLRLYDNVGLYKSVALFQQLLYAVYVINEDDWRAHMDSGWKLMFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMTANIEYQTDELYRDIRLLENEDRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYKKSTSEICHLHIIEPLKTFELKPFQSLPDEFLQCLPDVSEEAALSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSNGQIMSKALKDNFIKEVAWRDFYRHCMCNWP : PHR_SALTY
PHR_SALTY         : PTHLVWFRRDLRLQDNLA.AAACRDASARVLALYISTP.QWQAHDMAPRQAAFISAQL.ALQTALAEKGIPLLFHEVA.FNASIETVKNVCRQHDVSH.FYNYQYEFNERQRDRAVEKLP.SVICEGFDDSVILAPG.AMTGNHEMYKVFTPFKNAWLR.LKEDIPPCVPAPKIRVSGLSTPLTPVSLNYPQQEFD.ALFPVEENAVIAQLRQFCAQ.ADEYALRRDFPAVDGTSRL.ASLATGGLSPRQCLHRLLA.QPQALDGGPGSVWLNELIW.EFYRHLMTWYP : S57795
S57795            : KTAVVWFRRDLRVDDNPALVAALAAAPN.VIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQALAALGSRLVIRRST...DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVPAAVVAEVDWFFPEQEASSDFKWKPGVGGAISELEHFLAERLTEFEHDRAKVDRDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRDFLQQMGYREYSRYLAFHFP : S39058
S39058            : GCSIVWFRRDLRVEDNPALAAAVRAGP..VIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRST...DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPK...KIISGDVADPLVFEDSEKGSNARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEALFLKSIGLREYSRYISFNHP : AB003433
AB003433          : ...VHWFRKGLRLHDNPALLAAVRGARC.VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRG....QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSSRMESCRAHDDTYGVPLEELGFPTAVWQGGETEALARLDKHLERKVANYERPRMNALLASPTGLSPYLRFGCLSCRLFYYRLWD.YKKVKRNSTPPSLFGQLLWREFFYTAATNNP : PHR_HALHA
PHR_HALHA         : .MQLFWHRRDLRTTDNRGLAAAAPGVTAVVAAVFCFDDEVLAHAAPP..RVAFMLDALAALRERYRDLGSDLIVRHG....DPAAVLPAVANDLDATRVVWNHDYSGLATDRDAGVRDALDGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEPADLAADTAL..ADTSPLPVQELGFAEAVPDAGTAAARSLLDAFRESGIYRYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAAR...AAKSDADTDDAFIGQLAWREFYAQVLYFNQ : YAT1_SYNP1
YAT1_SYNP1        : PLHLFWHRRDLRLADNLGLYAARQHTPT.VVGVFCFDPALLQGQDVAAVRVAYLLGCLQALKEAYQQRGGCLLMVQG....DPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNGIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPK..AAPVPPPPDFAPLEAT.EIASIPLPTHDLGFDWLILAPGEAAAAQQLAHFSQHAIYEYGEQRNYPGRPGTALLSPALKFGVIGIRTVWAAS...EAALEHARSDETWQQELAWREF......... : PHR_ANANI
PHR_ANANI         : APILFWHRRDLRLSDNIGLAAARAQSAQ.LIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQG....DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK..PTPVATPTELVDLSPEQPLLLSELPLKQLGFDWFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAA...SAAHALSRSDEVWQQELAWREFYQHALYHFP : S74829
S74829            : PLILLWHRRDLRLNDHLALAKARQKTAK.IVGVFCLDNKILQAEDMAPARVAYLLGCLQSLQDHYQRLGSELLVFQA....DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPK..TSPVPTPKDLQGLTPAEPLEPLAIPLADLGFIWLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPALDGTSQLSAALKFGVISPRTLWQTT...LEAWEQSRSEETWQQELAWREFYQHCLYSFP : PHR_NEUCR
PHR_NEUCR         : QAVVHWFKMDLRLHDNRSLWLASQKAKEALICLYVLSPEDLEAHLRAPIRVDFMLRTLEVLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKLLAGMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKHIEENPKPGPNPPGTKEKHENL.IPEAPEGRLRDDEKASLWPAGEHEALKRLEKFCDEAIGKYAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNTKKLNGGNEGRWISEVAWRDFYKHVLVHWP : PHR_STRGR
PHR_STRGR         : SVAVVLFTSDLRLHDNPVLRAALRDADE.VVPLFVRDDAVHRAGFDAPNPLAFLADCLAALDAGLRHRGGRLIVRRG....EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALAGLHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVR...GTQTAPRTVRVPDG..VASDPLP.DRDCVENGLARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGDATSRLSPHLHFGTVSAAELVHRAR....EK..GGLGGAFVRQLAWRDFHHQVLADRP : CR70_BACTO

                  : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281------ :
OrigSeq           : TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLITYHP :OrigSeq
cons              : --EEEEEE--------HHHHHHHHHHHHHHEEEEE----HHHHH---HHHHHHHHHHHHHHHHHHHHH---EEEEE------HHHHHHHHHHH---EEEEE------HHHHHHHHHHHHH--HHHHHH----------EE--------EE-HHHHHHHHH-------------------------------------------HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--- :cons
dsc               : ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHH------HH-----HHHHHHHHHHHHH--HHHHHHHHHHEE------------------HHHHHHHHHHH-----------EEE-------------------------HHHHHHHHHHHHHHH--HHHHHHHHH---------------------HHHHHHHHH--HHH------HHHHHHHHHHHHHHHH----- :dsc
mul               : -EEEEEH----------HHHHHHH-----EEEEEEE----HH--------HHHHHHHHHHHHHHHH----EEEEE----------HHHHHHH---HHHEEE----------HHHHHHHHHHHHHHH-----HE--------------EEEE------H---------------------------------------------HHHHHHHHHHHHHHHHHHH---------------------------EEHHHH---H-HHH-------HHHHHHHHHH--------- :mul
nnssp             : --EEE-----------HHHHHHHHHHHHHHEEEEE---HHHHHH------HHHHHHHHHHHHHHHHHH---EEEE----HHHHHHHHHHHHHHH---EEEE------HHHHHHHHHHHHHH-HHHHHH----------EE-------EEEHHHHHHHHHH-------------------------------------------HHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH--- :nnssp
phd               : --EEEEEE--------HHHHHHHHH---EEEEEEEE-----------HHHHHHHHHHHHHHHHHHHHH---EEEEE------HHHHHHHHHHH---EEEEEE------HHHHHHHHHHHH---EEEEE----------EE--------EE-HHHHHHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHH-------------EEE-------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--- :phd
pred              : ----------------HHHHHHHHHHHHHHEEEEE-------------HHHHHHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHHHH---EEEEE----HHHHHHHHHHHHHHHHHHHH-----EEE-------------EEEE---HHHHHHH------------------------------------------HHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--- :pred
zpred             : --EEEEHH--EE---HHHHHHHHHHHH-EEEEEEEE-HHHHHH------HHHHHHHHHHHHHHHHH----EEEEEE-------HHHHHHHHHHHHHHHHEE-------HHHHHHHHHHHHHHHHEEH---EEE----EEEE-----EEEEE--HH-----------------------------------------------HHHHHHHHHHHHH-----HHH------------EEEEEEEEEEEEEEEEEEE---------------HHHHHHHHHHH--------- :zpred


access            : EBBBBBB-EEBEBEEEBBBBBBBEEBEEBBBBBBBBBEEBBEBBEEBEB-BBBBBBBBEBBEEBBEE-BBEBBB-EBEE-EEBBEBBEEBBEEBEBBBBBBBBEBEB-EEEEE-EBBEBBEBBBBBBBBBBBBBBEEEBBEEEEEEBBBBBEBBE-BBE-BEEEEEE-EEBEEBEBBEBEEEBEBBEBEBEEEEBEBBBBEEEEEBBBEEBEEBBEEBBEE-EEEEE-BEEEBEEEBBBBBBBBBBBBEBBBBBB-EEEBEBBEEEEEEBBBEEBBBEEBBEBBBBE-E : access

PHD Rel           : 9657756434334674699999974463479999836221134346646589999999999999997389179994578883376799999733842466412446423335899999840431565345412588520148997731215356654433689998888987877778888887788887655566677897546999999999985342332123467789987521102245331469989999753677526985598999899999999741489 : PHD Rel
Pred Rel          : 0066665570856766680999898666877088767777677679776777789989999999887696578895899885688898888866665765557687687888789999998876555677507679976779999775608777688857688809898789887779888998887777899998887888787999999999867768889777997889998766666669765778789999999777777777678989989899887666000 : Predator Rel


dssp              : -EEEEE----------HHHHHH------EEEEEEEE-HHHHHH----HHHHHHHHHHHHHHHHHHHH----EEEEE---HHHHHHHHHHHHHHH---EEEEE----HHHHHHHHHHHHH----EEEEE---------------------HHHHHHHHHHHHHH----------------------------------------HHHHHHHHHHHHH-HHHHHHHH------------HHHHHH----HHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHH-H :dssp
define            : EEEEEEE--------HHHHHHHHH---EEEEEEEEEEHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEHHHHHHHHHHHHHHHHH----EEEEEEHHHHHHHHHHHHHHH--EEEEEE---------EEEE--------HHHHHHHHHHHHHHHEEEEEEEEE----EEEEE-EEEEEEEEEE-----EEEEHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHH--HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH--H :define
stride            : -EEEEE----------HHHHHHH-----EEEEEEEE-HHHHHHH---HHHHHHHHHHHHHHHHHHHHH---EEEEE---HHHHHHHHHHHHHHH---EEEEE----HHHHHHHHHHHHH----EEEEE-----------EE---EE---HHHHHHHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH----HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH-H :stride


Q3 values for 1dnpb-1-AUTO.1  View SS in Rasmol

	dssp	define	stride
phd	85.47	66.78	83.74
dsc	69.90	54.33	68.17
pred	76.12	58.82	73.01
mul	69.55	50.52	67.13
nnssp	82.70	64.71	81.66
zpred	65.40	55.36	66.09
cons	82.70	65.40	81.66