Predictions for request ./t0004

T0004: Polyribonucleotide Nucleotidyltransferase, S1 motif   : AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAA : T0004: Polyribonucleotide Nucleotidyltransferase, S1 motif  
MTCY01B221                                                   : RTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELA.RHVEVPDQVVAVGDDAMVKVIDIDLERRISLSLKQANEPAKYGM : MTCY01B221  
PNP_PHOLU                                                    : AEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVADYLQVGQETSVKVLEIDRQGRVRLSIKEATAEAPPAP : PNP_PHOLU  
RS1_SYNP6                                                    : NRLEVGEVVVGAVRGIKPYGAFIDIG.GVSGLLHISEIS.DHIETPHSVFNVNDEVKVMIIDLDAEGRISLSTKQLEPRNPEVV : RS1_SYNP6  
RS1_HAEIN                                                    : ENLVEGSEVKGVVKNLTEYGAFVDLGG.VDGLLHITDMA.KRVKHPSEIVNVGDEVTVKVLKFDKDTRVSLGLKQLGQAENHPV : RS1_HAEIN  
MTV00248                                                     : QLPTVGERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKKRIAKVEDVVNVGDKLRVEIADIDKRGKISLILVADEDAATVTS : MTV00248  
AF001598                                                     : SDLQVGMILEGLVSNVANFGAFVDIGVHQDGLVHISALS.KFVQDPREVVKAGDVVKVKVLEVDAAKRIALTMRLDDEKMP..S : AF001598  
ECOUW67331                                                   : NDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLS.KFVEDPHTVVKAGDIVKVKVLEVDLQKRIALTMRLDEQRRG.GG : ECOUW67331  
RR1_PORPU                                                    : SNLIVGNIIEGVINQITPYGLFIKAG.NLKGLVHISEIN.KQVERIPSQFKIGDTIKAVIIHVDKKGRLSLSMKHL........ : RR1_PORPU  
RR1_SPIOL                                                    : AQLGIGSVVTGTVQSLKPYGAFIDIG.GINGLLHVSQIS.DRVSDIATVLQPGDTLKVMILSHDREGRVSLSTKKLEPRNPKLV : RR1_SPIOL  
RS1B_SYNY3                                                   : GKIAAGNIYEGKVAKIQPYGVFVEIEG.VTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYNRISLSTRILETKFDEMM : RS1B_SYNY3  
SOU52048                                                     : MVPTIGDIYRNEIKSIAPYGAFVEIAPGREGLCHISELSPSYLAKAEDAFKVGDRVDVKLIEVNEKGQLALVGVL......... : SOU52048  
AF010578                                                     : MVPNIGDIYRNEIKSIVPYGVFVEIAPGREGLCYISELSSGWLAKAEDVFKVGDHIDVKLTEINEKGQLRLSHRALLPNSTDKS : AF010578  
PR22_YEAST                                                   : PSPVLHKVYEGKVRNITTFGCFVQIFGNCDGLVHISEMS.QRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQRNTESV : PR22_YEAST  
TEX_BORPE                                                    : NDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALA.KFVKDPRDVVRVGQTVTVKVLEVDVAKRVALTMRLNDAGNG.AG : TEX_BORPE  
YHGF_HAEIN                                                   : TDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS.KFVEDPHQVVKTGNIVKVKVLEVDVPKRIALTMRLDESKSDRTL : YHGF_HAEIN  
SAU19858                                                     : TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIPVIEGEKDDAEQ : SAU19858  
RS1H_BACSU                                                   : QSLEVGSVLDGKVQRLTDFGAFVDIGG.IDGLVHISQLS.SHVEKPSDVVEEGQEVKVKVLSVDRDERISLSIKDTLPGEKVKP : RS1H_BACSU  
RS1_HELPY                                                    : DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWKNVSHPNNYLSVGQEIDVKIIDIDPKRRLRVSLKQLTNESKHQV : RS1_HELPY  
BFHUPBAGN1                                                   : EKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWKKVKHPSEFTQIGADIEVQVLEIDKERRLSLGHKQLEEETVFTV : BFHUPBAGN1  
RS1_RHIME                                                    : AKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWKKNVHPGKILSTSQEVDVVVLEVDPTRRISLGLKQTLEAHSHPA : RS1_RHIME  
DNPNP                                                        : AEPEIGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVNDVRDELTEGQEVKVKLWKSMPRAGSTFN............ : DNPNP  
PNP_HAEIN                                                    : AEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPQEDSVE : PNP_HAEIN  
AT81KBGEN                                                    : NEPELYQVYKGRVTRVMDAGCFVQFDKGKEGLVHVSQMATRRVDKAKEFVKRDMEVYVKVISISSD.KYSLSMRDVDQPLRKPS : AT81KBGEN  
PNPA_BACSU                                                   : REVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGDEILVKVTEIDKQGRVNLSRKAVLRQQS... : PNPA_BACSU  
S74509                                                       : RKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQLTEGRVGKVEDEVGVGDEVIVKVREIDSKGRLNLTRLGIHPRNASRG : S74509  
CTU74759                                                     : AMFPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELS.KPFAKIEDVLSIGDKVSAKVIKLDPDKKVSLSIKEFLADAEEES : CTU74759  
BCRS1H                                                       : GEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIA.RHVKNPNEVLEMGQEVKVKVLEVHVAKRISLSIKEAFEEDYSQY : BCRS1H  
LLU24086                                                     : DQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQIS.KRIENPSEVLKSGDKVQVKVLDIKPAERISLSMKALEERGNDGS : LLU24086  
IF2A_METJA                                                   : EFPEEGDIVIGTVKDVKPYGAFVELLEGKEGMIHISEVT.GWVKNIRDHVKVGQRVVAKVLRVDERGHIDLSLKRVTEVQEWKR : IF2A_METJA  
G69315                                                       : GYPSKGEIVIGTVKRVLDFGAFVSLDEGREGMVHISEVA.GWIKDIREHVKKGQKVICKVLDVNPKGHIDLSIKDVNELQQWKN : G69315  
YABR_BACSU                                                   : MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVA.NYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDNDFRPK : YABR_BACSU  
H70010                                                       : AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVT.GFVKDINEHLSVGDEVQVKVLAVDEEGKISLSIRATQAKPRKPK : H70010  
consv                                                        : 1-1--3-12-5182251-4-6-825---23-77787273-1241-4-3-52-43-5-7181111---23264------------ : consv

                                                             : 1---------11--------21--------31--------41--------51--------61--------71--------81-- :
OrigSeq                                                      : AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAA : OrigSeq

cons                                                         : ------EEEEEEEEEE----EEEEE------EEEEE------EE-----E----EEEEEEEE-----EEEEEEE---------- : cons

dsc                                                          : ------EEEEEEEE------EEEEE------EEEEE-------------------EEEEEEE------EEEEEE---------- : dsc
mul                                                          : -------EHHHEEE------EEEEE------EEE--HH--H-HH----HHH---HEEEEEEHH-----H-E-H----------- : mul
nnssp                                                        : -------EE---EEEE-----EEEE------EEE-----HHHHHHHHHHHH---EEEEEEEE-----EEEEEHHHHH------- : nnssp
phd                                                          : ---EEEEEEEEEEEEEE---EEEEEE---EEEEEEEE-----EE-----E----EEEEEEEEE----EEEEEEE---------- : phd
pred                                                         : --------------------EEEEE------EEEEE------------EEE----EEEEEEE----HHHHHHHHHHH------- : pred
zpred                                                        : ----H-EEEEEEEEEEEEEEEEEEE----HHHEEEHHHH-------HHHHHHHHHHHHEEHHHHHHHHHHEE------------ : zpred

You                                                          :: You

access                                                       : EEBEBBEBBEBEBEBBBEBBBBBBBBEE-EBBBBBBEBBEE-BEEBEEBBEBBEEBBBEBBEBEEEEEBBBBBEEBEEEEEEEE : access

PHD Rel                                                      : 972422586777676531216999842841699999747752221211111485589999986389569999723566778789 : PHD Rel
Pred Rel                                                     : 007666666566677688887788689998867965567775588987676777566886666777757778787869799000 : Predator Rel


  


Notes


- The Consensus (cons) has a real world sustained Q3 average accuracy of ca. 72.9%
- SRS links will only work for swissprot entries because OWL is not indexed @EBI


Key:
consv - Conservation number (-) = 0; (+) = 10
phd   - PHD prediction
dsc   - DSC prediction
pred  - PREDATOR prediction 
nnssp - NNSSP prediciton 
zpred - Zpred prediction 
mul   - Mulpred prediction

access - Solvent Accessibility

PHD Rel - PHD Reliability
PRED Rel - NNSSP Reliability