Predictions for request ./t0019



t0019; RepA1 from E.coli (plasmid), 340 a.a.   : MAERYISQRHWSQLPPEEQIRVWEDYEAGRATTFLVEPERKRTKRRRGEHSTKPKCENPTWYRPARYKALSGQLGHRYNRLVKKDPVTGEQSLRMHMSRHPFYVQKRTFAGRKYAFRPEKQRLLDAVWPVLVSFSDAGTHTVGMSVSRLAKEISPKDSKGKVIPELEVTVSRLSRLLAEQVRFGVLGMSEETMWDRETRQRLPRYVWITPAGWQMLGVDMVKLHEQQQKRLRESEIRQQLIREGVLREDEDISVHAARKRWYLQRSQDALKHRRAKAAARKRANLLKKLPADQQIYEMSQHILKRMPPDEAYWCTPERLQQLAIRELYQLELTLAAPPPH : t0019; RepA1 from E.coli (plasmid), 340 a.a.  
KPU273452                                      : MNQKYLQLSDIESVELSPEFISWLESQSPKESLLLDEGTKRKTRRRRGTHSTACLCPEPSWYRPDNFKKLPGQLGHAYNRLVRRDRKTGALSLRMRISRHPYFVQLREQAGRKRDFRPEREKLLDAIVPLLVSTVDRATHIDTINLSKMAWQLSEKDSEGNVI..RKVTVPRVCRLLQHMMEFGLLALPEGVTWDPFNRKWFPKHVVLTERLWKMIGVDLDKLYAEQAEQVA.AEAAGWITRDEHG.QAEEISVKAARRRWYEKMMHATLVRRREAALKGKREKALAEQPYDDRAYAMSVHLIRTLPKDELHALSPEQFTQRVRSHLYQLDLGLEREPPH : KPU273452  
consv                                          : -678-97654657845547745-48577683767-4-65888-8----5---475-46-7----468-4-6-----3-----88-44--36----78----88--5-56----54----878----85-8---65-39--647888-88-679-4---6-5--1246---6-86---55777--8-986-377--448-657-87-59-436-6-9---84--737-5678327-635796-8336274-8---8---8---4655547-47--34-643--356-466-5-676-3--5-99858-3--67577--777-47455----8-7-334--- : consv

                                               : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331------- :
OrigSeq                                        : MAERYISQRHWSQLPPEEQIRVWEDYEAGRATTFLVEPERKRTKRRRGEHSTKPKCENPTWYRPARYKALSGQLGHRYNRLVKKDPVTGEQSLRMHMSRHPFYVQKRTFAGRKYAFRPEKQRLLDAVWPVLVSFSDAGTHTVGMSVSRLAKEISPKDSKGKVIPELEVTVSRLSRLLAEQVRFGVLGMSEETMWDRETRQRLPRYVWITPAGWQMLGVDMVKLHEQQQKRLRESEIRQQLIREGVLREDEDISVHAARKRWYLQRSQDALKHRRAKAAARKRANLLKKLPADQQIYEMSQHILKRMPPDEAYWCTPERLQQLAIRELYQLELTLAAPPPH : OrigSeq

cons                                           : ---HHHHH-----------HHHHHH------EEEEE---HHHHHH---------------------HHH------HHHHHHHE--------HEEEH------EEEHHHH--------HHHHHHHHHH-HEEEEEE-----E----HHHHHHH--------------EH--HHHHHHHHHHHHHHHE-------------------EEE--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------- : cons

dsc                                            : ---HHHHH-----------HHHHHH-------EEE--HHHHHHHH---------------------HHH------HHHHHHHH---------EEEE------EEEHHH---HHHHHHHHHHHHHH---EEEEE----------HHHHHHHHH------------------HHHHHHHHHHHHHEEE---------HHHHH-----EEE--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH------------HHHHHHHHHHHHHHEE-------- : dsc
mul                                            : HHHHHHH-----------HHHHHHH----HHHEEEHHH-H----------------------------------------H-H-------H-H----------EEHHH----------HHHHHHHHHE-EEEE--------------HHHHHH--------HE----EEEEH-HHHHHHHHHHH---------HH---------EEEEHH---HHHHHH-HHHHHHHHHHHH-HHHHHHHHH-----HHHHHHHHHH----HHHH-HHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHH-------------HHHHHHHHHHHHHH-------- : mul
nnssp                                          : HHHHHHHHH--------HHHHHHHHH------EEEE---HHHHHHH--------------------HHHHHHHH-HHHHHHHH------HHHHHHHH----EEEEHHHHH--------HHHHHHHHHHHHEEE------------HHHHHHHH----------HHHHHHHHHHHHHHHHHHHH--EE-----------------EEEE-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH------ : nnssp
phd                                            : -----E-------------EEEEE-------EEEEE------------------------------HHH------HHHHHHHE--------EEEE--------EEEHHH--------HHHHHHHHHH--EEEEEE-----E----HHHHHHH--------------EE---HHHHHHHHHHHHHHE-------------------EEE--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------- : phd
pred                                           : ---HHHHHHHHH---------HHHHHH---EEEEEEE--HHHHHHHH--------------------------------EEEE------HHHHHHHHH----HHHHHHH----EEE--HHHHHHHHHHHHEEEEE----EEE--HHHHHHHHHHH------EEE---HHHHHHHHHHHHHHHH-----------HHHHHHH---EEEEE--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH------ : pred
zpred                                          : HHHHHHE----------HHHHHHHH-----HHHHHHHHHHHHH-E----------------EE--------EEEEEEEEEEEEEE----HHHHHEEE-----EEEEHHH--------HHHHHHHHHEEEEEEEE--HHEEEEEEEHHHHHHHHHH------EEEEEEEEEEEHHHHHHHHHHHHH-----HHHHHH--------EEEEEH--HHEHEHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE-----HHH---HHHHHHH-EEEEEHHEEE------- : zpred


You                                            :: You

access                                         : EEEE-BBBE-BEEBEEEEEBBBBBE-EEEEEBBBBEEEEEEEEEEEEEEEBEEBEBEEEE---EEEBEEBBEEBB-BBB-BBEEEEEEBEBBBEB-BBEBBBBBEBEEEEE-E-EBEEEEEEBBEBBBBBBBBBBEBBEBBBBBBBBEBBEEBBEEEEEEEBBEEBEBBBB-BBEBBBEBBEBBBBBBEEEBB-EEE--EEBEEBBBBBEEBBEBBBBEBBEB-EEEBEEBEEBEB-B-BBEEEEBEEBEEBBBEBBEEEBBBEBBEBBBEEEEEEBBEEEEEEBBEE-EEEEEBBBBBBBBBEEBEEEEB-BBBEEEBEE-BBEEBBEBEBBBEEEEEE : access

PHD Rel                                        : 9653112131565999731356331478964256415689743324556678889999976885331341344432244431027886642354120458511333442177567993699997743215788862577411332179999717668989976853112223899999998843222463455673212259961365213356421234799999999999999999899645224125424899999999999999999999999999987868628874277898799999299512346893889999999999987771699999 : PHD Rel
Pred Rel                                       : 0077779977768900000600777777065009808767777779699000889000900099078667667767775505609999678700008809000086688067055770697858985557777888977687765799790066709998865500777688889099999955555897800090770509997000077570765667778890000990999999909806668877768999870099999989999099900090000990005909788787987770089999677079989999009999999867700000 : Predator Rel



  



Notes


- The Consensus (cons) has a real world sustained Q3 average accuracy of ca. 72.9%
- SRS links will only work for swissprot entries because OWL is not indexed @EBI


Key:
consv - Conservation number (-) = 0; (+) = 10
phd   - PHD prediction
dsc   - DSC prediction
pred  - PREDATOR prediction 
nnssp - NNSSP prediciton 
zpred - Zpred prediction 
mul   - Mulpred prediction

access - Solvent Accessibility

PHD Rel - PHD Reliability
PRED Rel - NNSSP Reliability