Predictions for request ./t0023



T0023; KDO 8-P Synthase from E.coli, 284a.a.   : MKQKVVSIGDINVANDLPFVLLGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK : T0023; KDO 8-P Synthase from E.coli, 284a.a.  
S74729                                         : YSEVSTPAGPVAIGKNHPVAVVAGPCSVENETMIVETARRVKAAGA....QFLRGGAFKP..RTSPYAFQGHG.ESALGLLAAAKEATGLGIITEVMDAADLEIIAEVADVIQVGARNMQNFSMLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGITFDGHYNCLDLSVLPVLRSLT.HLPIMIDPSHGTGKS...........EYVPSMAMAAIAAGTDSLMIEVHPNPAKAMSDGPQSLTPDRFDETMKQLAVIGQTVGRWPKVAALA : S74729  
AROG_BACSU                                     : KKPTIVDIK.GEKIGDGQQRFIVGPCAVESY...E.QVAEVAAAAKKQGIKILRGGAFKP..RTSPYDFQGLG.VEGLQILKRVADEFDLAVISEIVTPAHIEEALDYIDVIQIGARNMQNFELLKAAGAVKKPVLLKRGLAATISEFINAAEYIMSQGNDQIILCERGITYETATNTLDISAVPILKQET.HLPVFVDVTHSTGRR...........DLLLPTAKAALAIGADGVMAEVHPDPSVALSDSAQQMAIPEFEKWLNELKPMVKVNA......... : AROG_BACSU  
SXCCPA                                         : LKPTIVQFDNGGIIGDGNKSFVFGPCSVESQ...E.QVDAVAANLQARGEKFIRGGAFKP..RTSPYDFQGLG.VEGLKILKNTKDKYGLNVVSEIVNPADFEVADEYLDVFQIGARNMQNFELLKEAGRSNKPVLLKRGLSATIEEFIYAAEYIASQGNENIILCERGITYEKATNTLDISAVPILKQGT.HLPVMVDVTHSTGRK...........DIMIPTAKAGLAVGADGIMAEVHPDPSVALSDSGQQMDFNEFDKFYNEIKPLADMYNSKKLK.... : SXCCPA  
PSY14272                                       : MDPSVLLYNQLKAAD..PFFLLAGPNVIESEEHIMRMAKHIKTISSKFGIPLIFKSSFDKANRTSSKSFRGPGIVEGLKILEKVKIAYDIPIVTDVHEASQCEPVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMANSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREAN..CPVVADITHSLQQPDGGGVASGGLRELIPCIARTSVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHLEELLEELIAISRVSKGKKPFNIDL : PSY14272  
KDSA_HELPY                                     : ........MKTSKTKTPKSVLIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEMLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVNIKKGQFMNPKDMQYSVLKALKTRDNGVWLCERGSSFGYGNLVVDMRSLKIMREF...APVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDMLKIQNLF.......... : KDSA_HELPY  
KDSA_CHLPS                                     : ............MFS.DKMILIAGPCVIEEEETTLEIASKIQEIVATDHIHWIFKSSYDKANRSSINSYRGPGLQEGLRILSKVKQTFGVEILTDVHSPEEARAAAEVCDILQIPAFLCRQTDLLVAAAETHAVINIKKGQFLSPWDMQGPVDKVLSTGNSKIILTERGCSFGYNNLVSDMRSIAVLSKMG..FPVVFDGTHSVQLPGGLKTHSGGQTEFIPTLTRAALAAGAHGLFIETHMNPAIAKSDAASMLSLKTFEALLPIWNQLYQCVRSFEMAAV.. : KDSA_CHLPS  
KDSA_CHLTR                                     : ............MFPENKMLLIAGPCVIEDN.SVFETARRLKEIVGASSVHWIFKSSYDKANRSSVHNYRGPGLRLGLQTLAKIKEELDVEILTDVHSPDEAREAAKVCDIIQVPAFLCRQTDLLVTAGETQAIVNIKKGQFLSPWEMQGPIDKVLSTGNNKIILTERGCSFGYNNLVSDMRSIEVLRRFG..FPVVSDGTHSVQLPGALHSQSGGQTEFIPVLTRSAIAAGVQGLFKETHPNPSSALSDAASMLSLKDLERLLPAWVQLFTYIQEMDAVSV.. : KDSA_CHLTR  
consv                                          : ------------341--311685-6758-51---1-5721522443----165447785321-7-33487-1-121982672254325451887883452354162556-87-86-457786588226724145858-86646651374436365215373386888--4583314564-5256158431-2-3-863-47-76532------212--35641675676-6-517883-6-27-11-25-766561413781552262181453---------- : consv

                                               : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281- :
OrigSeq                                        : MKQKVVSIGDINVANDLPFVLLGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK : OrigSeq

cons                                           : ---EEEEE----------EEEE--------HHHHHHHHHHHHHHHHH---EEEEE------------------HHHHHHHHHHHHHH---EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEE------HHHHHHHHHHHHH-----EEEEE----------EE----HHHHHHH----EEEEE-------------------HHHHHHHHHHHHHH---EEEEE----------------HHHHHHHHHHHHHHHHHHH--------- : cons

dsc                                            : ----EEE-----------EEEE-----HHHHHHHHHHHHHHHHHHH----HHHHH-------------------HHHHHHHHHHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-----EEE------------HHHHHHHHHHHHH----EEEE--------------------HHHHHHHHHHHHHHHHHHEEE------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- : dsc
mul                                            : ------------------EEEEE-----H-HHHHHHHHHHHHHHHH---HEEEE---------------------HHHHHHHHHHH---EEE-HHHH----HHHHHHHHHHEEE---------HHHHHHH--EEEE----HHHH----HHHHHHHH-----EEEEE---------------HHHHHH--------EEEE--------------------EE--HHHHHHHH----E-EE-----------------HHHHHHHHHHHHHHHHHH--HH-H---- : mul
nnssp                                          : ----EEE-----------EEEE--------HHHHHHHHHHHHHHHHH---EEEE-------------------HHHHHHHHHHHHHH---EEEE-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----EEE--------HHHHHHHHHHHHH-----EEEE-----------------HHHHHH------EEEE-------------------HHHHHHHHHHHHH----EEE------------------HHHHHHHHHHHHHHHHHH---------- : nnssp
phd                                            : ---EEEEE----------EEEEE--------HHHHHHHHHHHHHHHH---EEEEEE-----------------HHHHHHHHHHHHHH---EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEE-------HHHHHHHHHHHH-----EEEEE---EE-----EE----HHHHHHH----EEEEE------------------HHHHHHHHHHHHHHH---EEEEE-----------------HHHHHHHHHHHHHHHHHH--------- : phd
pred                                           : ---EEEEE----------EEEE------HHHHHHHHHHHHHHHHHHH---EEEEE--------------------HHHHHHHHHHHHHHEEEEE-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----EEE-----------HHHHHHHHH------EEEEE----------------------------EEEE-------------------HHHHHHHHHHHHH----EEEEE--------------HHHHHHHHHHHHHHHHHHHH---------- : pred
zpred                                          : ------------------EEEEE---EHHHHHHHHHHHHHHHHHHH----EEEE---------EEE---------HHHHHHHHHHHHHHHHEEEEE---HHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEE--HHHHHHHHEE------EEEEEE--------EEEEHHHHHHHH------EEEEEEEE-----------------EEEHHHHHHHHHHHHHHEEEH---HHHHHHHHHHHH--HHHHHHHHHHHHHHHE----------- : zpred


You                                            :: You

access                                         : EEEEBBBBEEBEBBEEBEBBBBBBEBBBEB-E-BBEBBEEBEEBBEEEBBEBBBEBBBEEBEEEBBEBBEBEEBEEBBEBBEEBEEEBBBEBBBEBBEBEEBEBBBEBBBBBEBBBBBBEBBEBBEEBBEEEBBBBBEEB-BBBBEEBBEBBEEBBEEEEEEBBBBEEBBEBE-B-BBBEBBBBEBBEEBEEEBBBBBEBB-BBE-EEEBEB-EEE-BEBBBBBBEBBBBBBBEBBBBEB-EEEEEBBBEBBEBBEBEEBEEBBEEBBBBBEBBEE-E-BBBEE : access

PHD Rel                                        : 99704452576557899668984974134313689999999999740573467763325578887665779613799999999997579557751577157899999998877447643338999996327743666157412516787799999991798179995475131243211222134223507995258965642118998898777751135899999999641525788508865567899778872469999999999998631222222589 : PHD Rel
Pred Rel                                       : 00065586087609898709980998655787899709888778078685599955799977998877789996768899999998866586666688976088888866677878888898999998667056676679877789866887777558999799996898889766566676666775588999789776676668999999999995637899888887766655995879999889999998865578899999988888886976788000 : Predator Rel



  



Notes


- The Consensus (cons) has a real world sustained Q3 average accuracy of ca. 72.9%
- SRS links will only work for swissprot entries because OWL is not indexed @EBI


Key:
consv - Conservation number (-) = 0; (+) = 10
phd   - PHD prediction
dsc   - DSC prediction
pred  - PREDATOR prediction 
nnssp - NNSSP prediciton 
zpred - Zpred prediction 
mul   - Mulpred prediction

access - Solvent Accessibility

PHD Rel - PHD Reliability
PRED Rel - NNSSP Reliability