Predictions for request t0079

T0079 MarA protein, E. coli   : MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS : T0079 MarA protein, E. coli  
RAMA_ENTCL                    : MTIS.....AQVIDTIVEWIDDNLHQPLRIEDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQTFTRIFTRTFHQPPGAYRKENH...SR.....TH... : RAMA_ENTCL  
MARA_SALTY                    : MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRITNMHGESRYMLPLNHGNY : MARA_SALTY  
SOXS_SALTY                    : ........HQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHRL................ : SOXS_SALTY  
B69750                        : ........YEKAVQKTINWIESHLHEQISNEDIVNVSSFSKFHFHRIFQKEVGMSVASYIRLRRLANAAAALLYTDHRIIDIALYYQFESQEAFTRTFKKMYHMPPGAYRTFRFTSKKEEYMEKKMKGW : B69750  
G69777                        : ........LLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLTLAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSKARFNSLKAYPRMTFQLTIKGG : G69777  
LLLPK21417                    : ........WLERMNNALNYIENSLNEEIDYKEIAKAANCSEFHFSRMFSSISGISLSEYIRRRRLTLAAFEIQKSDIRIIDVAIKYGYVSSDTFSRAFQKMHGVTPSNARNRQLKAFPRISFQISIKGD : LLLPK21417  
AARP_PROST                    : ISYSRKHTQSSIISEILVWIEGNLTNRLSLDDIAQHSGYTKWHLQRVFRKIVGMPLGEYIRRRRICEAAKELQTTNLQVIDIALKYQFDSQQSFAKRFKAYLGISPSLYRLSDTGYNDLLLLEPKVA.. : AARP_PROST  
TETD_ECOLI                    : SRYQNKANHTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRARRLTKAAVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRR.....NKLWELEAMH... : TETD_ECOLI  
ECOAFRABRS2                   : ........KTLTINAITQYIDDNLESIIDINALVDYSGYSRRYLQLLFKENIGVTLGKYIQLRRITRAAILLRFTNLKIVDISERLFYDSQQTFTREFKKNSGYTPLQYRKSKVWVFKNMTGHRKANHN : ECOAFRABRS2  
CAFR_YERPE                    : ........KQMTVNSIIQYIEENLESKINIDCLVLYSGFSRRYLQISFKEYVGMPIGTYIRVRRASRAAALLRLTRLTIIEISAKLFYDSQQTFTREFKKIFGYTPRQYRMIPFWSFKGLLGRREINCV : CAFR_YERPE  
PQRA_PROVU                    : ........AENVVNDILKWLETQLQRNIKIDTIANKSGYSKWHLQRIFKDFKGCTLGEYVRKRRLLEAAKSLQEKDMSILDIALMYGFSSQATFTRIFKKHFNTTPAKFRENGTMPDTHCFMSCETH.. : PQRA_PROVU  
YKGA_ECOLI                    : MRYDKELTRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQ : YKGA_ECOLI  
G69899                        : ........VPLHAMKIDEYRAGSGIEAA.LDPFWSSIRYLLTEEAKAGTANSLHMLVQYIKEKLQSHSYASIAYIHSHLFERLTIKKLAEIEHYHPAYYSSWFKKQTGKSPQNYIADLRLEAKRMLMER : G69899  
AF0392072                     : ........ESSGEKPGKHYILKADLLAIIGLIYREIPQIKTQPDSVISEDAVLKSQETLHKLDQIFSYVEKHYQEPVSLQEVANYTGFST.YYFTKFFKRNTGMTFVTFLN.....DYRLKAKWMLLNE : AF0392072  
consv                         : -----1-1-1112115219421221--6-32-4111325223122344111221452363615443-34-13111--1744342-32624-22623-842-112241-32------------------- : consv

                              : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121------ :
OrigSeq                       : MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS : OrigSeq

cons                          : ---------HHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHH-----------------E-EE------ : cons

dsc                           : ---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-----HHHH--HH---HHHHHHHHH--- : dsc
mul                           : ---------HHHHHHHHHHHHH----HHHHHHHHH--------HHHHHHH--------H-H--HHHHHHHHHHH---HHHHHHHH--------HHHHHH---------------------H-------- : mul
nnssp                         : EEEE-----HHHHHHHHHHHHHH------HHHHHH-----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHH--------------------------- : nnssp
phd                           : ---------HHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHH-----------------E-EE------ : phd
pred                          : ---------EEEHHHHHHHHHHH-----------------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-----HHHHHHHHHH---------------------------- : pred
zpred                         : ----------HHHEEEEHHHHH----HHHHHHHHH------HHHHHHHH------HEEEEEHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----------------------HHH------ : zpred

You                           :: You

access                        : EEBBEEBBEBBBBEBBBEBBEE-BEEBBEBEEBBEBBEBBEBBBEEBBEEBBBBBBBEBBEBEEBBEBBBEBEEEEEEBBEBBBEBBBEBEEEBBE-BEEBBEB-EEEB-BEEB-BBBEBBBEBEBEEE : access

PHD Rel                       : 973122553057899999999965245343566431561279999999975141078999999999999999854833899999753442156999999983678865323653344211102013489 : PHD Rel
Pred Rel                      : 007707977597888979897867777668857757799776888909888688766888999099999999986965777787866977676087788556899999076575599008088088000 : Predator Rel


  


Notes


- The Consensus (cons) has a real world sustained Q3 average accuracy of ca. 72.9%
- SRS links will only work for swissprot entries because OWL is not indexed @EBI


Key:
consv - Conservation number (-) = 0; (+) = 10
phd   - PHD prediction
dsc   - DSC prediction
pred  - PREDATOR prediction 
nnssp - NNSSP prediciton 
zpred - Zpred prediction 
mul   - Mulpred prediction

access - Solvent Accessibility

PHD Rel - PHD Reliability
PRED Rel - NNSSP Reliability