HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 1.0 1991 PDBID 0_T0 DATE file generated on 13-Aug-98 SEQBASE temphssp PARAMETER CONVERTSEQ of 0_T0 THRESHOLD according to: ALL REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991). CONTACT e-mail (INTERNET) Schneider@EMBL-Heidelberg.DE or Sander@EMBL-Heidelberg.DE / fax +49-6221-387306 AVAILABLE Free academic use. Commercial users must apply for license. AVAILABLE No inclusion in other databanks without permission. HEADER COMPND SOURCE AUTHOR SEQLENGTH 79 NCHAIN 1 chain(s) in 0_T0 data set NALIGN 1 NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LGAP: total length of all insertions and deletions NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : PROTEIN: one-line description of aligned protein NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their NOTATION : acid/amide form in proportion to their database frequencies NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100 NOTATION : WEIGHT: conservation weight ## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics NR. ID STRID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN 1 : 1_AR 0.70 0.00 6 79 1 74 74 0 0 74 ## ALIGNMENTS 1 - 1 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7 1 1 M 0 0 0 1 0 2 2 R 0 0 0 1 0 3 3 S 0 0 0 1 0 4 4 S 0 0 0 1 0 5 5 A 0 0 0 1 0 6 6 K 0 0 0 2 48 M 7 7 Q 0 0 0 2 59 T 8 8 E 0 0 0 2 0 E 9 9 E 0 0 0 2 37 N 10 10 L 0 0 0 2 0 L 11 11 V 0 0 0 2 48 T 12 12 K 0 0 0 2 26 R 13 13 A 0 0 0 2 0 A 14 14 F 0 0 0 2 0 F 15 15 K 0 0 0 2 0 K 16 16 A 0 0 0 2 44 E 17 17 L 0 0 0 2 0 L 18 18 L 0 0 0 2 0 L 19 19 K 0 0 0 2 41 N 20 20 E 0 0 0 2 30 Q 21 21 E 0 0 0 2 0 E 22 22 K 0 0 0 2 26 R 23 23 F 0 0 0 2 0 F 24 24 S 0 0 0 2 33 G 25 25 S 0 0 0 2 0 S 26 26 Q 0 0 0 2 0 Q 27 27 G 0 0 0 2 33 S 28 28 E 0 0 0 2 0 E 29 29 I 0 0 0 2 0 I 30 30 V 0 0 0 2 0 V 31 31 A 0 0 0 2 44 D 32 32 A 0 0 0 2 0 A 33 33 L 0 0 0 2 0 L 34 34 Q 0 0 0 2 41 K 35 35 E 0 0 0 2 44 K 36 36 Q 0 0 0 2 0 Q 37 37 G 0 0 0 2 0 G 38 38 F 0 0 0 2 0 F 39 39 D 0 0 0 2 48 T 40 40 N 0 0 0 2 41 G 41 41 I 0 0 0 2 0 I 42 42 N 0 0 0 2 0 N 43 43 Q 0 0 0 2 0 Q 44 44 S 0 0 0 2 0 S 45 45 K 0 0 0 2 0 K 46 46 V 0 0 0 2 15 I 47 47 S 0 0 0 2 0 S 48 48 R 0 0 0 2 0 R 49 49 M 0 0 0 2 0 M 50 50 L 0 0 0 2 0 L 51 51 T 0 0 0 2 44 S 52 52 K 0 0 0 2 0 K 53 53 F 0 0 0 2 0 F 54 54 G 0 0 0 2 0 G 55 55 A 0 0 0 2 0 A 56 56 V 0 0 0 2 0 V 57 57 R 0 0 0 2 0 R 58 58 T 0 0 0 2 0 T 59 59 R 0 0 0 2 0 R 60 60 N 0 0 0 2 0 N 61 61 A 0 0 0 2 41 T 62 62 K 0 0 0 2 0 K 63 63 M 0 0 0 2 0 M 64 64 E 0 0 0 2 0 E 65 65 M 0 0 0 2 0 M 66 66 V 0 0 0 2 0 V 67 67 Y 0 0 0 2 0 Y 68 68 C 0 0 0 2 0 C 69 69 L 0 0 0 2 0 L 70 70 P 0 0 0 2 0 P 71 71 A 0 0 0 2 48 N 72 72 E 0 0 0 2 0 E 73 73 L 0 0 0 2 0 L 74 74 G 0 0 0 2 33 S 75 75 V 0 0 0 2 0 V 76 76 P 0 0 0 2 0 P 77 77 T 0 0 0 2 48 N 78 78 T 0 0 0 2 0 T 79 79 S 0 0 0 2 0 S ## SEQUENCE PROFILE AND ENTROPY SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT 1 1 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 1 0 0 0.000 0 1.00 3 3 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 4 4 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 5 5 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 6 6 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 2 0 0 0.693 100 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 50 0 0 0 2 0 0 0.693 100 1.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 0 2 0 0 0.693 100 1.00 10 10 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 11 11 50 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 2 0 0 0.693 100 1.00 13 13 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 14 14 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 15 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 16 16 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 50 0 0 2 0 0 0.693 100 1.00 17 17 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 18 18 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 19 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 50 0 2 0 0 0.693 100 1.00 20 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 0 0 2 0 0 0.693 100 1.00 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 22 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 2 0 0 0.693 100 1.00 23 23 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 24 24 0 0 0 0 0 0 0 50 0 0 50 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 25 25 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 26 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00 27 27 0 0 0 0 0 0 0 50 0 0 50 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 28 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 29 29 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 30 30 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 31 31 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 50 2 0 0 0.693 100 1.00 32 32 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 33 33 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 34 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 0 0 0 2 0 0 0.693 100 1.00 35 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 0 0 2 0 0 0.693 100 1.00 36 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00 37 37 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 38 38 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 39 39 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 50 2 0 0 0.693 100 1.00 40 40 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 50 0 2 0 0 0.693 100 1.00 41 41 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 42 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 2 0 0 0.000 0 1.00 43 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00 44 44 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 45 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 46 46 50 0 50 0 0 0 0 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