HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 1.0 1991 PDBID 0_T0 DATE file generated on 13-Aug-98 SEQBASE temphssp PARAMETER CONVERTSEQ of 0_T0 THRESHOLD according to: ALL REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991). CONTACT e-mail (INTERNET) Schneider@EMBL-Heidelberg.DE or Sander@EMBL-Heidelberg.DE / fax +49-6221-387306 AVAILABLE Free academic use. Commercial users must apply for license. AVAILABLE No inclusion in other databanks without permission. HEADER COMPND SOURCE AUTHOR SEQLENGTH 66 NCHAIN 1 chain(s) in 0_T0 data set NALIGN 6 NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LGAP: total length of all insertions and deletions NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : PROTEIN: one-line description of aligned protein NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their NOTATION : acid/amide form in proportion to their database frequencies NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100 NOTATION : WEIGHT: conservation weight ## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics NR. ID STRID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN 1 : 1_CO 1.00 0.00 1 66 1 66 66 0 0 66 2 : 2_CO 1.00 0.00 1 66 1 66 66 0 0 66 3 : 3_IN 1.00 0.00 1 66 1 66 66 0 0 66 4 : 4_AS 0.98 0.00 1 66 1 66 66 0 0 66 5 : 5_AS 0.98 0.00 1 66 1 66 66 0 0 66 6 : 6_AS 0.98 0.00 1 66 1 66 66 0 0 66 ## ALIGNMENTS 1 - 6 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7 1 1 E 0 0 0 4 0 EEEEEE 2 2 T 0 0 0 4 0 TTTTTT 3 3 V 0 0 0 4 0 VVVVVV 4 4 E 0 0 0 4 0 EEEEEE 5 5 S 0 0 0 4 0 SSSSSS 6 6 C 0 0 0 4 0 CCCCCC 7 7 L 0 0 0 4 0 LLLLLL 8 8 A 0 0 0 4 0 AAAAAA 9 9 K 0 0 0 4 0 KKKKKK 10 10 P 0 0 0 4 41 PPPSSS 11 11 H 0 0 0 4 0 HHHHHH 12 12 T 0 0 0 4 0 TTTTTT 13 13 E 0 0 0 4 0 EEEEEE 14 14 N 0 0 0 4 0 NNNNNN 15 15 S 0 0 0 4 0 SSSSSS 16 16 F 0 0 0 4 0 FFFFFF 17 17 T 0 0 0 4 0 TTTTTT 18 18 N 0 0 0 4 0 NNNNNN 19 19 V 0 0 0 4 0 VVVVVV 20 20 W 0 0 0 4 0 WWWWWW 21 21 K 0 0 0 4 0 KKKKKK 22 22 D 0 0 0 4 0 DDDDDD 23 23 D 0 0 0 4 0 DDDDDD 24 24 K 0 0 0 4 0 KKKKKK 25 25 T 0 0 0 4 0 TTTTTT 26 26 L 0 0 0 4 0 LLLLLL 27 27 D 0 0 0 4 0 DDDDDD 28 28 R 0 0 0 4 0 RRRRRR 29 29 Y 0 0 0 4 0 YYYYYY 30 30 A 0 0 0 4 0 AAAAAA 31 31 N 0 0 0 4 0 NNNNNN 32 32 Y 0 0 0 4 0 YYYYYY 33 33 E 0 0 0 4 0 EEEEEE 34 34 G 0 0 0 4 0 GGGGGG 35 35 C 0 0 0 4 0 CCCCCC 36 36 L 0 0 0 4 0 LLLLLL 37 37 W 0 0 0 4 0 WWWWWW 38 38 N 0 0 0 4 0 NNNNNN 39 39 A 0 0 0 4 0 AAAAAA 40 40 T 0 0 0 4 0 TTTTTT 41 41 G 0 0 0 4 0 GGGGGG 42 42 V 0 0 0 4 0 VVVVVV 43 43 V 0 0 0 4 0 VVVVVV 44 44 V 0 0 0 4 0 VVVVVV 45 45 C 0 0 0 4 0 CCCCCC 46 46 T 0 0 0 4 0 TTTTTT 47 47 G 0 0 0 4 0 GGGGGG 48 48 D 0 0 0 4 0 DDDDDD 49 49 E 0 0 0 4 0 EEEEEE 50 50 T 0 0 0 4 0 TTTTTT 51 51 Q 0 0 0 4 0 QQQQQQ 52 52 C 0 0 0 4 0 CCCCCC 53 53 Y 0 0 0 4 0 YYYYYY 54 54 G 0 0 0 4 0 GGGGGG 55 55 T 0 0 0 4 0 TTTTTT 56 56 W 0 0 0 4 0 WWWWWW 57 57 V 0 0 0 4 0 VVVVVV 58 58 P 0 0 0 4 0 PPPPPP 59 59 I 0 0 0 4 0 IIIIII 60 60 G 0 0 0 4 0 GGGGGG 61 61 L 0 0 0 4 0 LLLLLL 62 62 A 0 0 0 4 0 AAAAAA 63 63 I 0 0 0 4 0 IIIIII 64 64 P 0 0 0 4 0 PPPPPP 65 65 E 0 0 0 4 0 EEEEEE 66 66 N 0 0 0 4 0 NNNNNN ## SEQUENCE PROFILE AND ENTROPY SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 3 3 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00 5 5 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 7 7 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 8 8 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 4 0 0 0.000 0 1.00 10 10 0 0 0 0 0 0 0 0 0 25 75 0 0 0 0 0 0 0 0 0 4 0 0 0.562 41 1.00 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 4 0 0 0.000 0 1.00 12 12 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00 15 15 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 16 16 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 17 17 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 18 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00 19 19 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 20 20 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 4 0 0 0.000 0 1.00 22 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00 23 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00 24 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 4 0 0 0.000 0 1.00 25 25 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 26 26 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 27 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00 28 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 4 0 0 0.000 0 1.00 29 29 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 30 30 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 31 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00 32 32 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 33 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00 34 34 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 35 35 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 36 36 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 37 37 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 38 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00 39 39 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 40 40 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 41 41 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 42 42 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 43 43 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 44 44 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 45 45 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 46 46 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 47 47 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 48 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00 49 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00 50 50 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 51 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 4 0 0 0.000 0 1.00 52 52 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 53 53 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 54 54 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 55 55 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 56 56 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 57 57 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 58 58 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 59 59 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 60 60 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 61 61 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 62 62 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 63 63 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 64 64 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00 65 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00 66 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00 //