HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 1.0 1991 PDBID T0032__BET DATE file generated on 13-Aug-98 SEQBASE temphssp PARAMETER CONVERTSEQ of T0032__BET THRESHOLD according to: ALL REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991). CONTACT e-mail (INTERNET) Schneider@EMBL-Heidelberg.DE or Sander@EMBL-Heidelberg.DE / fax +49-6221-387306 AVAILABLE Free academic use. Commercial users must apply for license. AVAILABLE No inclusion in other databanks without permission. HEADER COMPND SOURCE AUTHOR SEQLENGTH 98 NCHAIN 1 chain(s) in T0032__BET data set NALIGN 2 NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LGAP: total length of all insertions and deletions NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : PROTEIN: one-line description of aligned protein NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their NOTATION : acid/amide form in proportion to their database frequencies NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100 NOTATION : WEIGHT: conservation weight ## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics NR. ID STRID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN 1 : 1_EL 0.73 0.00 1 98 1 98 98 0 0 98 2 : 2_AF 0.57 0.00 1 98 1 98 98 0 0 98 ## ALIGNMENTS 1 - 2 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7 1 1 T 0 0 0 3 37 TE 2 2 A 0 0 0 3 31 AT 3 3 C 0 0 0 3 0 CC 4 4 T 0 0 0 3 34 TS 5 5 A 0 0 0 3 41 TP 6 6 T 0 0 0 3 0 TT 7 7 Q 0 0 0 3 23 QD 8 8 Q 0 0 0 3 0 QQ 9 9 T 0 0 0 3 0 TT 10 10 A 0 0 0 3 31 AT 11 11 A 0 0 0 3 0 AA 12 12 Y 0 0 0 3 0 YY 13 13 K 0 0 0 3 56 VS 14 14 T 0 0 0 3 26 AT 15 15 L 0 0 0 3 0 LL 16 16 V 0 0 0 3 37 VA 17 17 S 0 0 0 3 0 SS 18 18 I 0 0 0 3 11 IV 19 19 L 0 0 0 3 0 LL 20 20 S 0 0 0 3 34 ST 21 21 D 0 0 0 3 58 EL 22 22 A 0 0 0 3 24 SS 23 23 S 0 0 0 3 42 FS 24 24 F 0 0 0 3 0 FF 25 25 N 0 0 0 3 49 SQ 26 26 Q 0 0 0 3 48 TG 27 27 C 0 0 0 3 0 CC 28 28 S 0 0 0 3 24 AA 29 29 T 0 0 0 3 47 SD 30 30 D 0 0 0 3 0 DD 31 31 S 0 0 0 3 0 SS 32 32 G 0 0 0 3 0 GG 33 33 Y 0 0 0 3 3 YF 34 34 S 0 0 0 3 0 SS 35 35 M 0 0 0 3 6 ML 36 36 L 0 0 0 3 0 LL 37 37 T 0 0 0 3 51 TY 38 38 A 0 0 0 3 31 AS 39 39 K 0 0 0 3 29 TT 40 40 A 0 0 0 3 0 AA 41 41 L 0 0 0 3 0 LL 42 42 P 0 0 0 3 0 PP 43 43 T 0 0 0 3 37 TD 44 44 T 0 0 0 3 37 TD 45 45 A 0 0 0 3 0 AA 46 46 Q 0 0 0 3 0 QQ 47 47 Y 0 0 0 3 0 YY 48 48 K 0 0 0 3 59 EV 49 49 L 0 0 0 3 51 LK 50 50 M 0 0 0 3 0 MM 51 51 C 0 0 0 3 0 CC 52 52 A 0 0 0 3 0 AA 53 53 S 0 0 0 3 0 SS 54 54 T 0 0 0 3 37 TD 55 55 A 0 0 0 3 37 AN 56 56 C 0 0 0 3 0 CC 57 57 N 0 0 0 3 41 QK 58 58 T 0 0 0 3 47 ES 59 59 M 0 0 0 3 6 ML 60 60 I 0 0 0 3 0 II 61 61 K 0 0 0 3 27 EE 62 62 K 0 0 0 3 47 ES 63 63 I 0 0 0 3 11 IV 64 64 V 0 0 0 3 44 IA 65 65 T 0 0 0 3 36 AG 66 66 L 0 0 0 3 0 LL 67 67 N 0 0 0 3 0 NN 68 68 P 0 0 0 3 0 PP 69 69 P 0 0 0 3 0 PP 70 70 N 0 0 0 3 19 DN 71 71 C 0 0 0 3 0 CC 72 72 D 0 0 0 3 0 DD 73 73 L 0 0 0 3 0 LL 74 74 T 0 0 0 3 0 TT 75 75 V 0 0 0 3 0 VV 76 76 P 0 0 0 3 0 PP 77 77 T 0 0 0 3 0 TT 78 78 S 0 0 0 3 0 SS 79 79 G 0 0 0 3 0 GG 80 80 L 0 0 0 3 0 LL 81 81 V 0 0 0 3 0 VV 82 82 L 0 0 0 3 16 IL 83 83 N 0 0 0 3 0 NN 84 84 V 0 0 0 3 0 VV 85 85 Y 0 0 0 3 46 YV 86 86 S 0 0 0 3 36 ED 87 87 Y 0 0 0 3 34 YL 88 88 A 0 0 0 3 31 AT 89 89 N 0 0 0 3 34 NS 90 90 G 0 0 0 3 19 DG 91 91 F 0 0 0 3 0 FF 92 92 S 0 0 0 3 26 AS 93 93 N 0 0 0 3 45 SK 94 94 K 0 0 0 3 30 TK 95 95 C 0 0 0 3 0 CC 96 96 S 0 0 0 3 26 AS 97 97 S 0 0 0 3 0 SS 98 98 L 0 0 0 3 54 LS ## SEQUENCE PROFILE AND ENTROPY SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT 1 1 0 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 33 0 0 3 0 0 0.637 58 1.00 2 2 0 0 0 0 0 0 0 0 67 0 0 33 0 0 0 0 0 0 0 0 3 0 0 0.637 58 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 4 4 0 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 3 0 0 0.637 58 1.00 5 5 0 0 0 0 0 0 0 0 33 33 0 33 0 0 0 0 0 0 0 0 3 0 0 1.099 100 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 0 33 3 0 0 0.637 58 1.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 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