HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 1.0 1991 PDBID 0_T0 DATE file generated on 13-Aug-98 SEQBASE temphssp PARAMETER CONVERTSEQ of 0_T0 THRESHOLD according to: ALL REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991). CONTACT e-mail (INTERNET) Schneider@EMBL-Heidelberg.DE or Sander@EMBL-Heidelberg.DE / fax +49-6221-387306 AVAILABLE Free academic use. Commercial users must apply for license. AVAILABLE No inclusion in other databanks without permission. HEADER COMPND SOURCE AUTHOR SEQLENGTH 78 NCHAIN 1 chain(s) in 0_T0 data set NALIGN 2 NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LGAP: total length of all insertions and deletions NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : PROTEIN: one-line description of aligned protein NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their NOTATION : acid/amide form in proportion to their database frequencies NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100 NOTATION : WEIGHT: conservation weight ## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics NR. ID STRID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN 1 : 1_NR 1.00 0.00 1 78 1 78 78 0 0 78 2 : 2_NK 0.91 0.00 1 78 1 78 78 0 0 78 ## ALIGNMENTS 1 - 2 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7 1 1 G 0 0 0 2 0 GG 2 2 Y 0 0 0 2 44 YL 3 3 F 0 0 0 2 30 FI 4 4 C 0 0 0 2 0 CC 5 5 E 0 0 0 2 0 EE 6 6 S 0 0 0 2 0 SS 7 7 C 0 0 0 2 0 CC 8 8 R 0 0 0 2 0 RR 9 9 K 0 0 0 2 0 KK 10 10 I 0 0 0 2 0 II 11 11 I 0 0 0 2 0 II 12 12 Q 0 0 0 2 0 QQ 13 13 K 0 0 0 2 0 KK 14 14 L 0 0 0 2 0 LL 15 15 E 0 0 0 2 0 EE 16 16 D 0 0 0 2 0 DD 17 17 M 0 0 0 2 0 MM 18 18 V 0 0 0 2 0 VV 19 19 G 0 0 0 2 0 GG 20 20 P 0 0 0 2 0 PP 21 21 Q 0 0 0 2 0 QQ 22 22 P 0 0 0 2 0 PP 23 23 N 0 0 0 2 0 NN 24 24 E 0 0 0 2 0 EE 25 25 D 0 0 0 2 0 DD 26 26 T 0 0 0 2 0 TT 27 27 V 0 0 0 2 0 VV 28 28 T 0 0 0 2 0 TT 29 29 Q 0 0 0 2 0 QQ 30 30 A 0 0 0 2 0 AA 31 31 A 0 0 0 2 0 AA 32 32 S 0 0 0 2 0 SS 33 33 Q 0 0 0 2 41 QR 34 34 V 0 0 0 2 0 VV 35 35 C 0 0 0 2 0 CC 36 36 D 0 0 0 2 0 DD 37 37 K 0 0 0 2 0 KK 38 38 L 0 0 0 2 7 LM 39 39 K 0 0 0 2 0 KK 40 40 I 0 0 0 2 0 II 41 41 L 0 0 0 2 0 LL 42 42 R 0 0 0 2 0 RR 43 43 G 0 0 0 2 0 GG 44 44 L 0 0 0 2 26 LV 45 45 C 0 0 0 2 0 CC 46 46 K 0 0 0 2 0 KK 47 47 K 0 0 0 2 0 KK 48 48 I 0 0 0 2 0 II 49 49 M 0 0 0 2 0 MM 50 50 R 0 0 0 2 0 RR 51 51 S 0 0 0 2 44 ST 52 52 F 0 0 0 2 0 FF 53 53 L 0 0 0 2 0 LL 54 54 R 0 0 0 2 0 RR 55 55 R 0 0 0 2 0 RR 56 56 I 0 0 0 2 0 II 57 57 S 0 0 0 2 0 SS 58 58 W 0 0 0 2 52 WK 59 59 D 0 0 0 2 0 DD 60 60 I 0 0 0 2 0 II 61 61 L 0 0 0 2 0 LL 62 62 T 0 0 0 2 0 TT 63 63 G 0 0 0 2 0 GG 64 64 K 0 0 0 2 0 KK 65 65 K 0 0 0 2 0 KK 66 66 P 0 0 0 2 0 PP 67 67 Q 0 0 0 2 0 QQ 68 68 A 0 0 0 2 0 AA 69 69 I 0 0 0 2 0 II 70 70 C 0 0 0 2 0 CC 71 71 V 0 0 0 2 0 VV 72 72 D 0 0 0 2 0 DD 73 73 I 0 0 0 2 0 II 74 74 K 0 0 0 2 0 KK 75 75 I 0 0 0 2 0 II 76 76 C 0 0 0 2 0 CC 77 77 K 0 0 0 2 0 KK 78 78 E 0 0 0 2 0 EE ## SEQUENCE PROFILE AND ENTROPY SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT 1 1 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 2 2 0 50 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 3 3 0 0 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 6 6 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 10 10 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 11 11 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 14 14 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 15 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 16 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00 17 17 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 18 18 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 19 19 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 20 20 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00 22 22 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 23 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 2 0 0 0.000 0 1.00 24 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 25 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00 26 26 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 27 27 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 28 28 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 29 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00 30 30 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 31 31 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 32 32 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 33 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 0 0 0 2 0 0 0.693 100 1.00 34 34 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 35 35 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 36 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00 37 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 38 38 0 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 39 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 40 40 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 41 41 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 42 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00 43 43 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 44 44 50 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 45 45 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 46 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 47 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 48 48 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 49 49 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 50 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00 51 51 0 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 52 52 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 53 53 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 54 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00 55 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00 56 56 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 57 57 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 58 58 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 50 0 0 0 0 2 0 0 0.693 100 1.00 59 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00 60 60 0 0 100 0 0 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