HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 1.0 1991 PDBID 0_T0 DATE file generated on 24-Jul-98 SEQBASE temphssp PARAMETER CONVERTSEQ of 0_T0 THRESHOLD according to: ALL REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991). CONTACT e-mail (INTERNET) Schneider@EMBL-Heidelberg.DE or Sander@EMBL-Heidelberg.DE / fax +49-6221-387306 AVAILABLE Free academic use. Commercial users must apply for license. AVAILABLE No inclusion in other databanks without permission. HEADER COMPND SOURCE AUTHOR SEQLENGTH 101 NCHAIN 1 chain(s) in 0_T0 data set NALIGN 1 NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LGAP: total length of all insertions and deletions NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : PROTEIN: one-line description of aligned protein NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their NOTATION : acid/amide form in proportion to their database frequencies NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100 NOTATION : WEIGHT: conservation weight ## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics NR. ID STRID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN 1 : 1_JC 0.99 0.00 1 101 1 101 101 0 0 101 ## ALIGNMENTS 1 - 1 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7 1 1 L 0 0 0 2 0 L 2 2 G 0 0 0 2 0 G 3 3 K 0 0 0 2 0 K 4 4 F 0 0 0 2 0 F 5 5 S 0 0 0 2 0 S 6 6 Q 0 0 0 2 0 Q 7 7 T 0 0 0 2 0 T 8 8 C 0 0 0 2 0 C 9 9 Y 0 0 0 2 0 Y 10 10 N 0 0 0 2 0 N 11 11 S 0 0 0 2 0 S 12 12 A 0 0 0 2 0 A 13 13 I 0 0 0 2 0 I 14 14 Q 0 0 0 2 0 Q 15 15 G 0 0 0 2 0 G 16 16 S 0 0 0 2 0 S 17 17 V 0 0 0 2 0 V 18 18 L 0 0 0 2 0 L 19 19 T 0 0 0 2 0 T 20 20 S 0 0 0 2 0 S 21 21 T 0 0 0 2 0 T 22 22 C 0 0 0 2 0 C 23 23 E 0 0 0 2 0 E 24 24 R 0 0 0 2 0 R 25 25 T 0 0 0 2 0 T 26 26 N 0 0 0 2 0 N 27 27 G 0 0 0 2 0 G 28 28 G 0 0 0 2 0 G 29 29 Y 0 0 0 2 0 Y 30 30 N 0 0 0 2 0 N 31 31 T 0 0 0 2 0 T 32 32 S 0 0 0 2 0 S 33 33 S 0 0 0 2 0 S 34 34 I 0 0 0 2 0 I 35 35 D 0 0 0 2 0 D 36 36 L 0 0 0 2 0 L 37 37 N 0 0 0 2 0 N 38 38 S 0 0 0 2 0 S 39 39 V 0 0 0 2 0 V 40 40 I 0 0 0 2 0 I 41 41 E 0 0 0 2 0 E 42 42 N 0 0 0 2 0 N 43 43 V 0 0 0 2 0 V 44 44 D 0 0 0 2 0 D 45 45 G 0 0 0 2 0 G 46 46 S 0 0 0 2 0 S 47 47 L 0 0 0 2 0 L 48 48 K 0 0 0 2 0 K 49 49 W 0 0 0 2 0 W 50 50 Q 0 0 0 2 0 Q 51 51 P 0 0 0 2 0 P 52 52 S 0 0 0 2 0 S 53 53 N 0 0 0 2 0 N 54 54 F 0 0 0 2 0 F 55 55 I 0 0 0 2 0 I 56 56 E 0 0 0 2 0 E 57 57 T 0 0 0 2 0 T 58 58 C 0 0 0 2 0 C 59 59 R 0 0 0 2 0 R 60 60 N 0 0 0 2 0 N 61 61 T 0 0 0 2 0 T 62 62 N 0 0 0 2 41 Q 63 63 L 0 0 0 2 0 L 64 64 A 0 0 0 2 0 A 65 65 G 0 0 0 2 0 G 66 66 S 0 0 0 2 0 S 67 67 S 0 0 0 2 0 S 68 68 E 0 0 0 2 0 E 69 69 L 0 0 0 2 0 L 70 70 A 0 0 0 2 0 A 71 71 A 0 0 0 2 0 A 72 72 E 0 0 0 2 0 E 73 73 C 0 0 0 2 0 C 74 74 K 0 0 0 2 0 K 75 75 T 0 0 0 2 0 T 76 76 R 0 0 0 2 0 R 77 77 A 0 0 0 2 0 A 78 78 Q 0 0 0 2 0 Q 79 79 Q 0 0 0 2 0 Q 80 80 F 0 0 0 2 0 F 81 81 V 0 0 0 2 0 V 82 82 S 0 0 0 2 0 S 83 83 T 0 0 0 2 0 T 84 84 K 0 0 0 2 0 K 85 85 I 0 0 0 2 0 I 86 86 N 0 0 0 2 0 N 87 87 L 0 0 0 2 0 L 88 88 D 0 0 0 2 0 D 89 89 D 0 0 0 2 0 D 90 90 H 0 0 0 2 0 H 91 91 I 0 0 0 2 0 I 92 92 A 0 0 0 2 0 A 93 93 N 0 0 0 2 0 N 94 94 I 0 0 0 2 0 I 95 95 D 0 0 0 2 0 D 96 96 G 0 0 0 2 0 G 97 97 T 0 0 0 2 0 T 98 98 L 0 0 0 2 0 L 99 99 K 0 0 0 2 0 K 100 100 Y 0 0 0 2 0 Y 101 101 E 0 0 0 2 0 E ## SEQUENCE PROFILE AND ENTROPY SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT 1 1 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 2 2 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 4 4 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 5 5 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 9 9 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 2 0 0 0.000 0 1.00 11 11 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 12 12 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 13 13 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 2 0 0 0.000 0 1.00 15 15 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 16 16 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 17 17 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 18 18 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 19 19 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 20 20 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 21 21 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 22 22 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 23 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 24 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00 25 25 0 0 0 0 0 0 0 0 0 0 0 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