HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 1.0 1991 PDBID 0_T0 DATE file generated on 24-Jul-98 SEQBASE temphssp PARAMETER CONVERTSEQ of 0_T0 THRESHOLD according to: ALL REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991). CONTACT e-mail (INTERNET) Schneider@EMBL-Heidelberg.DE or Sander@EMBL-Heidelberg.DE / fax +49-6221-387306 AVAILABLE Free academic use. Commercial users must apply for license. AVAILABLE No inclusion in other databanks without permission. HEADER COMPND SOURCE AUTHOR SEQLENGTH 89 NCHAIN 1 chain(s) in 0_T0 data set NALIGN 1 NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LGAP: total length of all insertions and deletions NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : PROTEIN: one-line description of aligned protein NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their NOTATION : acid/amide form in proportion to their database frequencies NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100 NOTATION : WEIGHT: conservation weight ## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics NR. ID STRID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN 1 : 1_HD 1.00 0.00 1 89 1 89 89 0 0 89 ## ALIGNMENTS 1 - 1 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7 1 1 A 0 0 0 1 0 A 2 2 D 0 0 0 1 0 D 3 3 A 0 0 0 1 0 A 4 4 Q 0 0 0 1 0 Q 5 5 K 0 0 0 1 0 K 6 6 A 0 0 0 1 0 A 7 7 A 0 0 0 1 0 A 8 8 D 0 0 0 1 0 D 9 9 N 0 0 0 1 0 N 10 10 K 0 0 0 1 0 K 11 11 K 0 0 0 1 0 K 12 12 P 0 0 0 1 0 P 13 13 V 0 0 0 1 0 V 14 14 N 0 0 0 1 0 N 15 15 S 0 0 0 1 0 S 16 16 W 0 0 0 1 0 W 17 17 T 0 0 0 1 0 T 18 18 C 0 0 0 1 0 C 19 19 E 0 0 0 1 0 E 20 20 D 0 0 0 1 0 D 21 21 F 0 0 0 1 0 F 22 22 L 0 0 0 1 0 L 23 23 A 0 0 0 1 0 A 24 24 V 0 0 0 1 0 V 25 25 D 0 0 0 1 0 D 26 26 E 0 0 0 1 0 E 27 27 S 0 0 0 1 0 S 28 28 F 0 0 0 1 0 F 29 29 Q 0 0 0 1 0 Q 30 30 P 0 0 0 1 0 P 31 31 T 0 0 0 1 0 T 32 32 A 0 0 0 1 0 A 33 33 V 0 0 0 1 0 V 34 34 G 0 0 0 1 0 G 35 35 F 0 0 0 1 0 F 36 36 A 0 0 0 1 0 A 37 37 E 0 0 0 1 0 E 38 38 A 0 0 0 1 0 A 39 39 L 0 0 0 1 0 L 40 40 N 0 0 0 1 0 N 41 41 N 0 0 0 1 0 N 42 42 K 0 0 0 1 0 K 43 43 D 0 0 0 1 0 D 44 44 K 0 0 0 1 0 K 45 45 P 0 0 0 1 0 P 46 46 E 0 0 0 1 0 E 47 47 D 0 0 0 1 0 D 48 48 A 0 0 0 1 0 A 49 49 V 0 0 0 1 0 V 50 50 L 0 0 0 1 0 L 51 51 D 0 0 0 1 0 D 52 52 V 0 0 0 1 0 V 53 53 Q 0 0 0 1 0 Q 54 54 G 0 0 0 1 0 G 55 55 I 0 0 0 1 0 I 56 56 A 0 0 0 1 0 A 57 57 T 0 0 0 1 0 T 58 58 V 0 0 0 1 0 V 59 59 T 0 0 0 1 0 T 60 60 P 0 0 0 1 0 P 61 61 A 0 0 0 1 0 A 62 62 I 0 0 0 1 0 I 63 63 V 0 0 0 1 0 V 64 64 Q 0 0 0 1 0 Q 65 65 A 0 0 0 1 0 A 66 66 C 0 0 0 1 0 C 67 67 T 0 0 0 1 0 T 68 68 Q 0 0 0 1 0 Q 69 69 D 0 0 0 1 0 D 70 70 K 0 0 0 1 0 K 71 71 Q 0 0 0 1 0 Q 72 72 A 0 0 0 1 0 A 73 73 N 0 0 0 1 0 N 74 74 F 0 0 0 1 0 F 75 75 K 0 0 0 1 0 K 76 76 D 0 0 0 1 0 D 77 77 K 0 0 0 1 0 K 78 78 V 0 0 0 1 0 V 79 79 K 0 0 0 1 0 K 80 80 G 0 0 0 1 0 G 81 81 E 0 0 0 1 0 E 82 82 W 0 0 0 1 0 W 83 83 D 0 0 0 1 0 D 84 84 K 0 0 0 1 0 K 85 85 I 0 0 0 1 0 I 86 86 K 0 0 0 1 0 K 87 87 K 0 0 0 1 0 K 88 88 D 0 0 0 1 0 D 89 89 M 0 0 0 1 0 M ## SEQUENCE PROFILE AND ENTROPY SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT 1 1 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1 0 0 0.000 0 1.00 3 3 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 1 0 0 0.000 0 1.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 1 0 0 0.000 0 1.00 6 6 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 7 7 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1 0 0 0.000 0 1.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 1 0 0 0.000 0 1.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 1 0 0 0.000 0 1.00 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 1 0 0 0.000 0 1.00 12 12 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 13 13 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 1 0 0 0.000 0 1.00 15 15 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 16 16 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 17 17 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 18 18 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 19 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 1 0 0 0.000 0 1.00 20 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1 0 0 0.000 0 1.00 21 21 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 22 22 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 23 23 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 24 24 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 25 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1 0 0 0.000 0 1.00 26 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 1 0 0 0.000 0 1.00 27 27 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 28 28 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 29 29 0 0 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0.000 0 1.00 89 89 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 //