BLASTP 1.4.8MP [20-June-1995] [Build 18:43:14 Mar 21 1997]

Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers,
and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol. Biol.
215:403-10.

Query=  T0063 Translation initiation factor 5A, Pyrobaculum aerophilum
        (138 letters)

Database:  /homes/james/jpred//databases//owl2/owl2
           240,636 sequences; 76,431,475 total letters.
Searching..................................................done

WARNING:  -hspmax 100 was exceeded with 1 of the database sequences, with as
          many as 138 HSPs being found at one time.

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

pir|P28461|IF5A_SULAC  POSSIBLE INITIATION FACTOR 5A (IF-...   321  1.5e-50   2
pir|AB005215|AB0052159 AB005215 NID: g2696445 - Pyrococcu...   288  9.2e-44   2
pir|A69216|A69216      translation initiation factor, eIF...   278  1.8e-40   2
pir|Q58625|IF5A_METJA  POSSIBLE INITIATION FACTOR 5A (IF-...   278  3.2e-40   2
pir|E69330|E69330      translation initiation factor eIF-...   276  2.3e-33   1
pir|Y08735|AAFFH       AAFFH NID: g1619585 - Acidianus am...   119  3.8e-23   2
pir|AB004823|AB004823  AB004823 NID: g2225878 - Solanum t...   172  5.0e-18   1
pir|AB004824|AB004824  AB004824 NID: g2225880 - Solanum t...   172  5.0e-18   1
pir|AB004825|AB004825  AB004825 NID: g2225882 - Solanum t...   170  9.9e-18   1
pir|P23301|IF52_YEAST  INITIATION FACTOR 5A-2 (EIF-5A) (E...   166  3.7e-17   1
pir|P24922|IF52_NICPL  INITIATION FACTOR 5A-2 (EIF-5A) (E...   165  6.1e-17   1
pir|P19211|IF51_YEAST  INITIATION FACTOR 5A-1 (EIF-5A) (E...   162  2.1e-16   1
pir|Z99126|SPAC26H59   SPAC26H5 NID: g2398810 - fission y...   162  2.2e-16   1
pir|AF034943|AF034943  AF034943 NID: g2668737 - maize.         160  1.1e-15   1
pir|P24921|IF51_NICPL  INITIATION FACTOR 5A-1 (EIF-5A) (E...   159  2.0e-15   1
pir|AB004826|AB004826  AB004826 NID: g2225884 - Solanum t...   159  2.0e-15   1
pir|P38672|IF5A_NEUCR  INITIATION FACTOR 5A (EIF-5A) (EIF...   157  6.4e-15   1
pir|Q07460|IF51_CHICK  INITIATION FACTOR 5A-1 (EIF-5A) (E...   156  7.6e-15   1
pir|P13651|IF5A_DICDI  INITIATION FACTOR 5A (EIF-5A) (EIF...   153  4.6e-14   1
pir|Z18509|ATTS0885    ATTS0885 NID: g17633 - thale cress.     143  1.0e-13   1
pir|P10159|IF5A_HUMAN  INITIATION FACTOR 5A (EIF-5A) (EIF...   150  1.1e-13   1
pir|P10160|IF5A_RABIT  INITIATION FACTOR 5A (EIF-5A) (EIF...   150  1.1e-13   1
pir|Q20751|IF52_CAEEL  PROBABLE INITIATION FACTOR 5A (EIF...   149  2.1e-13   1
pir|Z18382|ATTS0756    ATTS0756 NID: g17474 - thale cress.     141  2.3e-13   1
pir|P34563|IF51_CAEEL  PROBABLE INITIATION FACTOR 5A (EIF...   148  3.1e-13   1
pir|S72024|S72024      S72024 NID: g565186 - human placenta.   146  5.9e-13   1
pir|P26564|IF5A_MEDSA  INITIATION FACTOR 5A (EIF-5A) (EIF...   134  6.4e-13   2
pir|Q09121|IF52_CHICK  INITIATION FACTOR 5A-2 (EIF-5A) (E...   132  4.3e-12   1
pir|Q26571|IF5A_SCHMA  INITIATION FACTOR 5A-2 (EIF-5A) (F...   111  1.1e-08   1
pir|B42156|B42156      translation initiation factor eIF-...    93  2.4e-08   2
pir|AE001132|AE0011321 AE001132 NID: g2688107 - Lyme dise...    75  5.9e-05   2
pir|P56004|EFP_HELPY   ELONGATION FACTOR P (EF-P). - HELI...    62  7.7e-05   2
pir|P49778|EFP_BACSU   ELONGATION FACTOR P (EF-P). - BACI...    63  0.0046    2


Parameters:
  E=0.05
  B=0
  V=900
  H=0

  -ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.136   0.374    same    same    same

  Query
  Frame  MatID  Length  Eff.Length   E    S W   T  X     E2  S2
   +0      0      138       138    0.050 77 3  11 22    0.23 31

Statistics:
  Query          Expected         Observed           HSPs       HSPs
  Frame  MatID  High Score       High Score       Reportable  Reported
   +0      0    65 (29.6 bits)  321 (146.2 bits)       43          0

  Query         Neighborhd  Word      Excluded    Failed   Successful  Overlaps
  Frame  MatID   Words      Hits        Hits    Extensions Extensions  Excluded
   +0      0      2851    19732654     3993746    15676558    62342        58

  Database:  /homes/james/jpred//databases//owl2/owl2
    Release date:  unknown
    Posted date:  10:04 AM BST Apr 7, 1998
  # of letters in database:  76,431,475
  # of sequences in database:  240,636
  # of database sequences satisfying E:  33
  No. of states in DFA:  533 (53 KB)
  Total size of DFA:  84 KB (128 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Real: 00:00:00
  No. of processors used:  12
  Time to search database:  47.45u 3.28s 50.73t  Real: 00:00:10
  Total cpu time:  47.48u 3.37s 50.85t  Real: 00:00:10

WARNINGS ISSUED:  1