HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 1.0 1991 PDBID 0_T0 DATE file generated on 24-Jul-98 SEQBASE temphssp PARAMETER CONVERTSEQ of 0_T0 THRESHOLD according to: ALL REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991). CONTACT e-mail (INTERNET) Schneider@EMBL-Heidelberg.DE or Sander@EMBL-Heidelberg.DE / fax +49-6221-387306 AVAILABLE Free academic use. Commercial users must apply for license. AVAILABLE No inclusion in other databanks without permission. HEADER COMPND SOURCE AUTHOR SEQLENGTH 57 NCHAIN 1 chain(s) in 0_T0 data set NALIGN 1 NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LGAP: total length of all insertions and deletions NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : PROTEIN: one-line description of aligned protein NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their NOTATION : acid/amide form in proportion to their database frequencies NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100 NOTATION : WEIGHT: conservation weight ## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics NR. ID STRID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN 1 : 1_SI 0.51 0.00 1 57 1 57 57 0 0 57 ## ALIGNMENTS 1 - 1 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7 1 1 M 0 0 0 2 0 M 2 2 K 0 0 0 2 41 N 3 3 N 0 0 0 2 41 K 4 4 A 0 0 0 2 44 D 5 5 K 0 0 0 2 0 K 6 6 Q 0 0 0 2 41 N 7 7 E 0 0 0 2 0 E 8 8 H 0 0 0 2 52 K 9 9 F 0 0 0 2 81 E 10 10 E 0 0 0 2 0 E 11 11 L 0 0 0 2 0 L 12 12 D 0 0 0 2 0 D 13 13 Q 0 0 0 2 30 E 14 14 E 0 0 0 2 0 E 15 15 W 0 0 0 2 0 W 16 16 V 0 0 0 2 48 T 17 17 E 0 0 0 2 0 E 18 18 L 0 0 0 2 0 L 19 19 M 0 0 0 2 33 I 20 20 V 0 0 0 2 63 K 21 21 E 0 0 0 2 41 H 22 22 A 0 0 0 2 0 A 23 23 K 0 0 0 2 67 L 24 24 E 0 0 0 2 0 E 25 25 A 0 0 0 2 48 Q 26 26 N 0 0 0 2 41 G 27 27 I 0 0 0 2 0 I 28 28 S 0 0 0 2 0 S 29 29 P 0 0 0 2 0 P 30 30 E 0 0 0 2 19 D 31 31 E 0 0 0 2 19 D 32 32 I 0 0 0 2 0 I 33 33 R 0 0 0 2 0 R 34 34 K 0 0 0 2 63 I 35 35 Y 0 0 0 2 4 F 36 36 L 0 0 0 2 0 L 37 37 L 0 0 0 2 70 N 38 38 L 0 0 0 2 0 L 39 39 N 0 0 0 2 41 G 40 40 K 0 0 0 2 0 K 41 41 K 0 0 0 2 0 K 42 42 S 0 0 0 2 0 S 43 43 A 0 0 0 2 41 S 44 44 H 0 0 0 2 52 K 45 45 P 0 0 0 2 0 p 46 46 G 0 0 0 2 30 a 47 47 P 0 0 0 2 41 S 48 48 A 0 0 0 2 56 I 49 49 A 0 0 0 2 44 E 50 50 R 0 0 0 2 0 R 51 51 S 0 0 0 2 0 S 52 52 H 0 0 0 2 0 H 53 53 T 0 0 0 2 44 S 54 54 V 0 0 0 2 15 I 55 55 N 0 0 0 2 0 N 56 56 P 0 0 0 2 0 P 57 57 F 0 0 0 2 0 F ## SEQUENCE PROFILE AND ENTROPY SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT 1 1 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 50 0 2 0 0 0.693 100 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 50 0 2 0 0 0.693 100 1.00 4 4 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 50 2 0 0 0.693 100 1.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 0 2 0 0 0.693 100 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 0 0 0 0 2 0 0 0.693 100 1.00 9 9 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 2 0 0 0.693 100 1.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 11 11 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 0 0 2 0 0 0.693 100 1.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 15 15 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 16 16 50 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 17 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 18 18 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 19 19 0 0 50 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 20 20 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 2 0 0 0.693 100 1.00 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 50 0 0 2 0 0 0.693 100 1.00 22 22 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 23 23 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 2 0 0 0.693 100 1.00 24 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00 25 25 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 50 0 0 0 2 0 0 0.693 100 1.00 26 26 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 50 0 2 0 0 0.693 100 1.00 27 27 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 28 28 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 29 29 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 30 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 2 0 0 0.693 100 1.00 31 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 2 0 0 0.693 100 1.00 32 32 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 33 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00 34 34 0 0 50 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 2 0 0 0.693 100 1.00 35 35 0 0 0 0 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 36 36 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 37 37 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 2 0 0 0.693 100 1.00 38 38 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 39 39 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 50 0 2 0 0 0.693 100 1.00 40 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 41 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 2 0 0 0.000 0 1.00 42 42 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 43 43 0 0 0 0 0 0 0 0 50 0 50 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 44 44 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 0 0 0 0 2 0 0 0.693 100 1.00 45 45 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 1 0.000 0 1.00 46 46 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 47 47 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 48 48 0 0 50 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 49 49 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 50 0 0 2 0 0 0.693 100 1.00 50 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00 51 51 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 52 52 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 2 0 0 0.000 0 1.00 53 53 0 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 54 54 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 100 1.00 55 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 2 0 0 0.000 0 1.00 56 56 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 57 57 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00 ## INSERTION LIST AliNo IPOS JPOS Len Sequence 1 45 45 1 pSa //