BLASTP 1.4.8MP [20-June-1995] [Build 18:43:14 Mar 21 1997] Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10. Query= T0070 Omp32 protein, Comamonas acidovorans (332 letters) Database: /homes/james/jpred//databases//owl2/owl2 240,636 sequences; 76,431,475 total letters. Searching..................................................done WARNING: -hspmax 100 was exceeded with 1 of the database sequences, with as many as 111 HSPs being found at one time. Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N pir|P24305|OM32_COMAC OUTER MEMBRANE PORIN PROTEIN 32 PRE... 1710 8.5e-232 1 pir|Q04064|OMP_BORPE OUTER MEMBRANE PORIN PROTEIN PRECUR... 98 8.1e-46 8 pir|I39570|I39570 ORF9 - Alcaligenes eutrophus 107 7.2e-33 7 pir|X97062|EVPORIN EVPORIN NID: g1922275 - Ectothiorho... 101 1.8e-25 6 pir|D63823|BCUOPCP1 BCUOPCP1 NID: g967989 - Burkholderi... 93 6.4e-17 5 pir|I40332|I40332 ompQ protein - Bordetella pertussis 87 5.8e-16 4 pir|S17456|S17456 outer membrane protein class 2 - Ne... 63 1.6e-12 7 pir|PH0224|PH0224 class-3 porin protein - Neisseria m... 62 7.8e-12 6 pir|U07190|NMU07190 NMU07190 NID: g507190 - Neisseria m... 62 5.4e-11 6 pir|U12652|NGU12652 NGU12652 NID: g595504 - Neisseria g... 66 2.0e-10 6 pir|S15171|S15171 outer membrane protein class 1 - Ne... 67 3.6e-10 6 pir|S15174|S15174 outer membrane protein class 1 - Ne... 67 4.3e-10 6 pir|S25508|S25508 outer membrane protein class III (s... 62 9.2e-10 5 pir|U59871|NMU59871 NMU59871 NID: g1381247 - Neisseria ... 62 1.1e-09 5 pir|S25512|S25512 outer membrane protein class II (se... 63 1.2e-09 6 pir|U59868|NMU59868 NMU59868 NID: g1381241 - Neisseria ... 62 1.2e-09 5 pir|U59872|NMU59872 NMU59872 NID: g1381249 - Neisseria ... 62 1.2e-09 5 pir|U59867|NMU59867 NMU59867 NID: g1381239 - Neisseria ... 62 1.2e-09 5 pir|U34194|NMU34194 NMU34194 NID: g1209512 - Neisseria ... 62 1.4e-09 5 pir|U07193|NMU07193 NMU07193 NID: g507196 - Neisseria m... 62 2.2e-09 5 pir|P30688|OMB2_NEIME MAJOR OUTER MEMBRANE PROTEIN P.IB P... 62 2.2e-09 5 pir|U07191|NMU07191 NMU07191 NID: g507192 - Neisseria m... 62 3.1e-09 5 pir|U07189|NMU07189 NMU07189 NID: g507188 - Neisseria m... 62 3.1e-09 5 pir|U11030|NMU11030 NMU11030 NID: g507842 - Neisseria m... 62 3.1e-09 5 pir|JH0254|JH0254 class-3 porin protein - Neisseria m... 62 3.8e-09 5 pir|X81048|NMPORBDNA NMPORBDNA NID: g556790 - Neisseria ... 62 3.8e-09 5 pir|P30690|OMB4_NEIME MAJOR OUTER MEMBRANE PROTEIN P.IB P... 62 5.8e-09 5 pir|S43181|S43181 outer membrane protein class 3 prec... 62 7.0e-09 5 pir|S25509|S25509 outer membrane protein class III (s... 62 8.1e-09 5 pir|X96496|NMPORB2 NMPORB2 NID: g1226024 - Neisseria m... 62 9.5e-09 5 pir|U59869|NMU59869 NMU59869 NID: g1381243 - Neisseria ... 62 1.0e-08 5 pir|P30689|OMB3_NEIME MAJOR OUTER MEMBRANE PROTEIN P.IB P... 62 1.1e-08 5 pir|U75633|NGU75633 NGU75633 NID: g1763317 - Neisseria ... 66 1.1e-08 5 pir|Y09308|NLPORIN NLPORIN NID: g1669707 - Neisseria l... 65 1.3e-08 5 pir|S45065|S45065 class 3 outer membrane protein - Ne... 62 1.3e-08 5 pir|S23247|S23247 outer membrane protein class 3 prec... 62 1.4e-08 5 pir|U07188|NMU07188 NMU07188 NID: g507186 - Neisseria m... 62 1.4e-08 5 pir|P30687|OMB1_NEIME MAJOR OUTER MEMBRANE PROTEIN P.IB P... 62 1.5e-08 5 pir|Y09309|NPPORIN NPPORIN NID: g1669709 - Neisseria p... 65 2.5e-08 5 pir|U09045|NGU09045 NGU09045 NID: g533467 - Neisseria g... 66 3.6e-08 5 pir|U09044|NGU09044 NGU09044 NID: g533465 - Neisseria g... 66 3.6e-08 5 pir|U09047|NGU09047 NGU09047 NID: g533471 - Neisseria g... 66 3.7e-08 5 pir|U09046|NGU09046 NGU09046 NID: g533469 - Neisseria g... 66 3.8e-08 5 pir|S24203|S24203 protein 1 - Neisseria gonorrhoeae (... 66 5.1e-08 5 pir|U75631|NGU75631 NGU75631 NID: g1763313 - Neisseria ... 66 5.6e-08 5 pir|U75632|NGU75632 NGU75632 NID: g1763315 - Neisseria ... 66 5.6e-08 5 pir|U75637|NGU75637 NGU75637 NID: g1763325 - Neisseria ... 66 5.6e-08 5 pir|U75638|NGU75638 NGU75638 NID: g1763327 - Neisseria ... 66 5.6e-08 5 pir|U75640|NGU75640 NGU75640 NID: g1763331 - Neisseria ... 66 5.6e-08 5 pir|U75643|NGU75643 NGU75643 NID: g1763337 - Neisseria ... 66 5.6e-08 5 pir|AF015119|AF015119 AF015119 NID: g2827059 - Neisseria ... 66 6.1e-08 4 pir|AF015120|AF015120 AF015120 NID: g2827061 - Neisseria ... 66 6.1e-08 4 pir|AF015118|AF015118 AF015118 NID: g2827057 - Neisseria ... 66 6.1e-08 4 pir|AF015122|AF015122 AF015122 NID: g2827065 - Neisseria ... 66 6.1e-08 4 pir|U75634|NGU75634 NGU75634 NID: g1763319 - Neisseria ... 66 7.7e-08 5 pir|X79056|NMPORAG1 NMPORAG1 NID: g541786 - Neisseria m... 70 1.0e-07 5 pir|P30691|OMB_NEILA MAJOR OUTER MEMBRANE PROTEIN P.IB P... 61 1.2e-07 5 pir|S44721|S44721 outer membrane protein class I - Ne... 67 1.3e-07 5 pir|U07887|NGU07887 NGU07887 NID: g468901 - Neisseria g... 66 1.3e-07 5 pir|U12651|NGU12651 NGU12651 NID: g595502 - Neisseria g... 66 1.4e-07 5 pir|S15175|S15175 outer membrane protein class 1 - Ne... 67 1.4e-07 5 pir|S44720|S44720 outer membrane protein class I - Ne... 67 1.4e-07 5 pir|S15173|S15173 outer membrane protein class 1 - Ne... 67 1.5e-07 5 pir|S44727|S44727 outer membrane protein class I - Ne... 67 1.8e-07 5 pir|U75641|NGU75641 NGU75641 NID: g1763333 - Neisseria ... 66 2.0e-07 5 pir|P18195|OMB1_NEIGO MAJOR OUTER MEMBRANE PROTEIN P.IB P... 66 2.0e-07 5 pir|U75642|NGU75642 NGU75642 NID: g1763335 - Neisseria ... 66 2.0e-07 5 pir|P20148|OMB2_NEIGO MAJOR OUTER MEMBRANE PROTEIN P.IB P... 66 2.0e-07 5 pir|U75639|NGU75639 NGU75639 NID: g1763329 - Neisseria ... 66 2.0e-07 5 pir|X81111|NMPORAP16 NMPORAP16 NID: g534942 - Neisseria ... 67 2.1e-07 5 pir|S25514|S25514 outer membrane protein class II (se... 63 2.2e-07 5 pir|U31063|NMU31063 NMU31063 NID: g1698410 - Neisseria ... 67 2.6e-07 5 pir|U31066|NMU31066 NMU31066 NID: g1698416 - Neisseria ... 67 2.6e-07 5 pir|P18194|OMA2_NEIME MAJOR OUTER MEMBRANE PROTEIN P.IA P... 67 2.9e-07 5 pir|U75635|NGU75635 NGU75635 NID: g1763321 - Neisseria ... 66 3.7e-07 5 pir|U75636|NGU75636 NGU75636 NID: g1763323 - Neisseria ... 66 3.7e-07 5 pir|S15176|S15176 outer membrane protein class 1 - Ne... 67 3.9e-07 5 pir|L19966|NGOSU98IA NGOSU98IA NID: g309602 - Neisseria ... 66 4.1e-07 4 pir|S25511|S25511 outer membrane protein class II (se... 63 4.2e-07 5 pir|L19963|NGOSU95IA NGOSU95IA NID: g309598 - Neisseria ... 67 1.1e-06 4 pir|S24202|S24202 protein 1 - Neisseria gonorrhoeae (... 66 1.1e-06 4 pir|L19958|NGOSU89IA NGOSU89IA NID: g309596 - Neisseria ... 66 1.5e-06 4 pir|L19960|NGOSU96IA NGOSU96IA NID: g309600 - Neisseria ... 66 1.5e-06 4 pir|L19961|NGOSU99IA NGOSU99IA NID: g309604 - Neisseria ... 66 1.5e-06 4 pir|Z69259|NGPORB NGPORB NID: g1177317 - Neisseria go... 66 1.5e-06 4 pir|P05430|OMA1_NEIGO MAJOR OUTER MEMBRANE PROTEIN PI.A P... 66 2.0e-06 4 pir|S44726|S44726 outer membrane protein class I - Ne... 70 4.9e-06 4 pir|D70829|D70829 D70829 NID: g1834310 - Eikenella co... 66 5.3e-06 4 pir|X81110|NMPORAP15 NMPORAP15 NID: g535120 - Neisseria ... 67 6.4e-06 5 pir|AF026890|AF026890 AF026890 NID: g2605725 - Neisseria ... 70 6.8e-06 4 pir|L19965|NGOPI35IA NGOPI35IA NID: g309587 - Neisseria ... 66 7.0e-06 4 pir|L19964|NGOSU100IA NGOSU100IA NID: g309590 - Neisseria... 66 7.0e-06 4 pir|L19962|NGOSU102IA NGOSU102IA NID: g309592 - Neisseria... 66 7.0e-06 4 pir|L19959|NGOSU70IA NGOSU70IA NID: g309594 - Neisseria ... 66 7.0e-06 4 pir|S44717|S44717 outer membrane protein class I - Ne... 70 7.1e-06 4 pir|S44718|S44718 outer membrane protein class I - Ne... 70 7.1e-06 4 pir|U31062|NMU31062 NMU31062 NID: g1698408 - Neisseria ... 70 8.5e-06 4 pir|P13415|OMA1_NEIME MAJOR OUTER MEMBRANE PROTEIN PI.A P... 70 1.2e-05 4 pir|S15170|S15170 outer membrane protein class 1 - Ne... 67 1.3e-05 4 pir|S44719|S44719 outer membrane protein class I - Ne... 67 1.3e-05 4 pir|S20537|S20537 outer membrane protein class 1 - Ne... 68 1.3e-05 4 pir|S15177|S15177 outer membrane protein class 1 - Ne... 68 1.4e-05 4 pir|S22757|S22757 outer membrane protein class 1 - Ne... 68 1.4e-05 4 pir|S15172|S15172 outer membrane protein class 1 - Ne... 67 1.7e-05 4 pir|JL0140|JL0140 outer membrane protein class 1 - Ne... 68 1.8e-05 4 pir|S44724|S44724 outer membrane protein class I - Ne... 67 1.9e-05 4 pir|S44725|S44725 outer membrane protein class I - Ne... 67 1.9e-05 4 pir|L02929|NGOPORA3S NGOPORA3S NID: g150344 - Neisseria ... 68 2.0e-05 4 pir|S44723|S44723 outer membrane protein class I - Ne... 67 2.0e-05 4 pir|S44722|S44722 outer membrane protein class I - Ne... 67 2.0e-05 4 pir|S26753|S26753 outer membrane protein porA - Neiss... 67 2.1e-05 4 pir|U31064|NMU31064 NMU31064 NID: g1698412 - Neisseria ... 67 2.1e-05 4 pir|AF015121|AF015121 AF015121 NID: g2827063 - Neisseria ... 66 2.1e-05 4 pir|AF015117|AF015117 AF015117 NID: g2827055 - Neisseria ... 66 2.3e-05 4 pir|S17459|S17459 outer membrane protein precursor - ... 66 2.4e-05 4 pir|S25515|S25515 outer membrane protein class II - N... 63 3.1e-05 4 pir|X78467|NMPORAA NMPORAA NID: g534046 - Neisseria me... 67 4.0e-05 4 pir|S18770|S18770 outer membrane protein porA - Neiss... 64 4.1e-05 4 pir|S25513|S25513 outer membrane protein class II (se... 63 7.8e-05 4 pir|Z48486|NMMC121 NMMC121 NID: g683759 - Neisseria me... 68 9.2e-05 4 pir|Z48492|NMMC130 NMMC130 NID: g683769 - Neisseria me... 68 9.2e-05 4 pir|Z48491|NMMC139 NMMC139 NID: g683775 - Neisseria me... 68 9.2e-05 4 pir|Z48485|NMMC125 NMMC125 NID: g683763 - Neisseria me... 68 9.3e-05 4 pir|Z48493|NMMC133 NMMC133 NID: g683771 - Neisseria me... 68 9.3e-05 4 pir|Z48489|NMMC135 NMMC135 NID: g683773 - Neisseria me... 68 9.3e-05 4 pir|Z48488|NMMC117 NMMC117 NID: g683755 - Neisseria me... 68 9.4e-05 4 pir|Z48494|NMMC119 NMMC119 NID: g683757 - Neisseria me... 68 9.4e-05 4 pir|Z48495|NMMC123 NMMC123 NID: g683761 - Neisseria me... 68 9.4e-05 4 pir|Z48487|NMMC127 NMMC127 NID: g683765 - Neisseria me... 68 9.4e-05 4 pir|Z48490|NMMC129 NMMC129 NID: g683767 - Neisseria me... 68 9.4e-05 4 pir|X78802|NMPORAF NMPORAF NID: g809738 - Neisseria me... 67 0.00010 4 pir|U73751|VCU73751 VCU73751 NID: g1658031 - Vibrio cho... 59 0.00087 3 pir|Y09307|NSPORIN NSPORIN NID: g1669711 - Neisseria s... 56 0.0026 4 pir|Y09310|NFPORIN NFPORIN NID: g1669703 - Neisseria f... 49 0.0032 4 pir|M93268|HEAOMPPA HEAOMPPA NID: g148962 - Haemophilus... 72 0.0058 3 pir|Y09311|NFPORIN2 NFPORIN2 NID: g1669705 - Neisseria ... 47 0.0063 4 pir|P30692|OMB_NEISI MAJOR OUTER MEMBRANE PROTEIN P.IB P... 49 0.011 4 pir|AL009198|MTV0044 MTV004 NID: g2661623 - Mycobacteriu... 55 0.016 5 pir|X73391|HIMOMP2P HIMOMP2P NID: g860949 - Haemophilus... 48 0.022 4 pir|Z95324|MTY13E1015 MTY13E10 NID: g2094819 - Mycobacter... 52 0.024 4 pir|M88134|HEAMJMX HEAMJMX NID: g148940 - Haemophilus ... 47 0.028 4 pir|X73390|HIMOMP2O HIMOMP2O NID: g860947 - Haemophilus... 46 0.031 4 pir|U08205|HIU08205 HIU08205 NID: g559995 - Haemophilus... 46 0.032 4 pir|P46026|OM24_HAEIN OUTER MEMBRANE PROTEIN P2 PRECURSOR... 46 0.038 4 Parameters: E=0.05 B=0 V=900 H=0 -ctxfactor=1.00 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +0 0 BLOSUM62 0.318 0.138 0.396 same same same Query Frame MatID Length Eff.Length E S W T X E2 S2 +0 0 332 332 0.050 81 3 11 22 0.21 34 Statistics: Query Expected Observed HSPs HSPs Frame MatID High Score High Score Reportable Reported +0 0 68 (31.2 bits) 1710 (783.5 bits) 833 0 Query Neighborhd Word Excluded Failed Successful Overlaps Frame MatID Words Hits Hits Extensions Extensions Excluded +0 0 5923 50325844 9614730 40651628 59462 357 Database: /homes/james/jpred//databases//owl2/owl2 Release date: unknown Posted date: 10:04 AM BST Apr 7, 1998 # of letters in database: 76,431,475 # of sequences in database: 240,636 # of database sequences satisfying E: 144 No. of states in DFA: 535 (53 KB) Total size of DFA: 114 KB (128 KB) Time to generate neighborhood: 0.02u 0.01s 0.03t Real: 00:00:00 No. of processors used: 12 Time to search database: 97.02u 2.88s 99.90t Real: 00:00:17 Total cpu time: 97.09u 2.99s 100.08t Real: 00:00:17 WARNINGS ISSUED: 1