HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 1.0 1991 PDBID 0_SEQ DATE file generated on 24-Jul-98 SEQBASE temphssp PARAMETER CONVERTSEQ of 0_SEQ THRESHOLD according to: ALL REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991). CONTACT e-mail (INTERNET) Schneider@EMBL-Heidelberg.DE or Sander@EMBL-Heidelberg.DE / fax +49-6221-387306 AVAILABLE Free academic use. Commercial users must apply for license. AVAILABLE No inclusion in other databanks without permission. HEADER COMPND SOURCE AUTHOR SEQLENGTH 48 NCHAIN 1 chain(s) in 0_SEQ data set NALIGN 2 NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LGAP: total length of all insertions and deletions NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : PROTEIN: one-line description of aligned protein NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their NOTATION : acid/amide form in proportion to their database frequencies NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100 NOTATION : WEIGHT: conservation weight ## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics NR. ID STRID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN 1 : 1_SEQ 0.69 0.00 8 42 1 29 35 1 6 29 2 : 2_SEQ 0.59 0.00 8 42 1 29 35 1 6 29 ## ALIGNMENTS 1 - 2 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7 1 1 S 0 0 0 1 0 2 2 L 0 0 0 1 0 3 3 A 0 0 0 1 0 4 4 A 0 0 0 1 0 5 5 L 0 0 0 1 0 6 6 K 0 0 0 1 0 7 7 S 0 0 0 1 0 8 8 E 0 0 0 3 0 EE 9 9 L 0 0 0 3 39 WV 10 10 Q 0 0 0 3 25 EE 11 11 A 0 0 0 3 0 AA 12 12 L 0 0 0 3 0 LL 13 13 K 0 0 0 3 37 EE 14 14 K 0 0 0 3 0 KK 15 15 E 0 0 0 3 37 KK 16 16 G 0 0 0 1 0 .. 17 17 F 0 0 0 1 0 .. 18 18 S 0 0 0 1 0 .. 19 19 P 0 0 0 1 0 .. 20 20 E 0 0 0 1 0 .. 21 21 E 0 0 0 1 0 .. 22 22 L 0 0 0 3 17 LV 23 23 A 0 0 0 3 0 AA 24 24 A 0 0 0 3 0 AA 25 25 L 0 0 0 3 0 LL 26 26 E 0 0 0 3 0 EE 27 27 S 0 0 0 3 0 SS 28 28 E 0 0 0 3 37 KK 29 29 L 0 0 0 3 17 LV 30 30 Q 0 0 0 3 0 QQ 31 31 A 0 0 0 3 0 AA 32 32 L 0 0 0 3 0 LL 33 33 E 0 0 0 3 0 EE 34 34 K 0 0 0 3 0 KK 35 35 K 0 0 0 3 0 KK 36 36 L 0 0 0 3 17 LV 37 37 A 0 0 0 3 37 EE 38 38 A 0 0 0 3 0 AA 39 39 L 0 0 0 3 0 LL 40 40 K 0 0 0 3 37 EE 41 41 S 0 0 0 3 53 HH 42 42 K 0 0 0 3 50 GG 43 43 L 0 0 0 1 0 44 44 Q 0 0 0 1 0 45 45 A 0 0 0 1 0 46 46 L 0 0 0 1 0 47 47 K 0 0 0 1 0 48 48 G 0 0 0 1 0 ## SEQUENCE PROFILE AND ENTROPY SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT 1 1 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 2 2 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 3 3 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 4 4 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 5 5 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 1 0 0 0.000 0 1.00 7 7 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3 0 0 0.000 0 1.00 9 9 33 33 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 1.099 100 1.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 67 0 0 3 0 0 0.637 58 1.00 11 11 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 12 12 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 67 0 0 3 0 0 0.637 58 1.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00 15 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 33 0 0 3 0 0 0.637 58 1.00 16 16 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0.000 0 1.00 17 17 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0.000 0 1.00 18 18 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 2 0 0.000 0 1.00 19 19 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 1 2 0 0.000 0 1.00 20 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 1 2 0 0.000 0 1.00 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 1 2 0 0.000 0 1.00 22 22 33 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 58 1.00 23 23 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 24 24 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 25 25 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 26 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3 0 0 0.000 0 1.00 27 27 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 28 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 33 0 0 3 0 0 0.637 58 1.00 29 29 33 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 58 1.00 30 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 3 0 0 0.000 0 1.00 31 31 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 32 32 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 33 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3 0 0 0.000 0 1.00 34 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00 35 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00 36 36 33 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 58 1.00 37 37 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 67 0 0 3 0 0 0.637 58 1.00 38 38 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 39 39 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00 40 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 67 0 0 3 0 0 0.637 58 1.00 41 41 0 0 0 0 0 0 0 0 0 0 33 0 0 67 0 0 0 0 0 0 3 0 0 0.637 58 1.00 42 42 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 33 0 0 0 0 3 0 0 0.637 58 1.00 43 43 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 44 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 1 0 0 0.000 0 1.00 45 45 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 46 46 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 47 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 1 0 0 0.000 0 1.00 48 48 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00 //