1---------------------------------------------------------------------------------------------------------------------------------- ------------------------------ M U L T A L I G N ------------------------------- ---------------------------------------------------------------------------------------------------------------------------------- ------------------------------ by ------------------------------- ------------------------------ Geoffrey J. Barton ------------------------------- ------------------------------ Laboratory of Molecular Biophysics ------------------------------- ------------------------------ The Rex Richards Building ------------------------------- ------------------------------ South Parks Road ------------------------------- ------------------------------ OXFORD OX1 3QU ------------------------------- ------------------------------ ENGLAND ------------------------------- ---------------------------------------------------------------------------------------------------------------------------------- ------------------------------ Please cite: ------------------------------- ------------------------------ Barton, G. J. (1990) Methods in Enzymology 183, 403-428. ------------------------------- ------------------------------ and also as appropriate: ------------------------------- ---------- Multiple alignment: Barton, G. J. and Sternberg, M. J. E. (1987), J. Mol. Biol., 198, 327-337. ----------- ---------- Flexible Patterns: Barton, G. J. and Sternberg, M. J. E. (1990), J. Mol. Biol., 212, 389-402. ----------- ---------- Structure Dependent Gap-Penalties: Barton, G. J. and Sternberg, M. J. E. (1987), Prot. Eng., 1, 89-94. ----------- ---------------------------------------------------------------------------------------------------------------------------------- ------------------------------ THANK YOU ------------------------------- ---------------------------------------------------------------------------------------------------------------------------------- !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!! This copy of MULTALIGN is supplied for use on a single machine !!!!!!!!!!! !!!!!!!!!! and must not be copied or redistributed without prior written consent from the author !!!!!!!!!!! !!!!!!!!!!!!!!!!!!!! Copyright (c) Geoffrey J Barton (1987) !!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Multalign Version D2.1 - June 1994 Maximum allowed sequence length = 3000 Maximum pattern length = 3000 Maximum number of sequences = 900 ---------------- matrix file read blosum62_p Matrix Min: 0 Max: 15 --------------------------------- Gap penalty : 10.00 ---------------------- Constant : 0 --------------- Number of iterations chosen : 1 ---------------------------------- Sequence file : t0084.seqs.tmpnon --------------------------------- PAIRWISE mode has been defined Checking minimal command set ---------------------------- -------------------------------------------- No checking currently performed in this mode -------------------------------------------- Commands satisfy this mode.. ---------------------------- ------------------------------ Sequences defined in SEQ file: ------------------------------ Index Identifier Length Name File order Score with 1 >targetseq 37 DUMMY 0 0.00 0 2 >T0084 RLZ, artifici 37 DUMMY 0 0.00 0 I J ILEN JLEN MATCH NGAPS NALIG NIDENT %IDENT NAS NASAL NRANS RMEAN STDEV SCORE 1 2 37 37 337.00 0 37 37 100.00 910.81 910.81 0 0.00 0.00 0.00 1 Times: TOTAL: 1.709 USER : 0.751 SYSTEM: 0.958