SILENT_MODE
BLOCK_FILE jp_FMvkFeH.concise.blc
MAX_NSEQ 158
MAX_INPUT_LEN 160
OUTPUT_FILE jp_FMvkFeH.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 106 147   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 148 106 157 H SPACE
SUB_CHARS 1 148 106 157 E SPACE
SUB_CHARS 1 148 106 157 - SPACE
STRAND 11 151 15
COLOUR_TEXT_REGION 11 151 15 151 51
STRAND 19 151 22
COLOUR_TEXT_REGION 19 151 22 151 51
STRAND 27 151 34
COLOUR_TEXT_REGION 27 151 34 151 51
STRAND 39 151 45
COLOUR_TEXT_REGION 39 151 45 151 51
STRAND 76 151 76
COLOUR_TEXT_REGION 76 151 76 151 51
STRAND 83 151 91
COLOUR_TEXT_REGION 83 151 91 151 51
HELIX 67 151 70
COLOUR_TEXT_REGION 67 151 70 151 50
HELIX 95 151 102
COLOUR_TEXT_REGION 95 151 102 151 50
STRAND 11 156 15
COLOUR_TEXT_REGION 11 156 15 156 51
STRAND 20 156 22
COLOUR_TEXT_REGION 20 156 22 156 51
STRAND 27 156 34
COLOUR_TEXT_REGION 27 156 34 156 51
STRAND 39 156 45
COLOUR_TEXT_REGION 39 156 45 156 51
STRAND 76 156 76
COLOUR_TEXT_REGION 76 156 76 156 51
STRAND 83 156 91
COLOUR_TEXT_REGION 83 156 91 156 51
HELIX 68 156 69
COLOUR_TEXT_REGION 68 156 69 156 50
HELIX 95 156 102
COLOUR_TEXT_REGION 95 156 102 156 50
STRAND 11 157 15
COLOUR_TEXT_REGION 11 157 15 157 51
STRAND 19 157 22
COLOUR_TEXT_REGION 19 157 22 157 51
STRAND 27 157 34
COLOUR_TEXT_REGION 27 157 34 157 51
STRAND 38 157 45
COLOUR_TEXT_REGION 38 157 45 157 51
STRAND 71 157 71
COLOUR_TEXT_REGION 71 157 71 157 51
STRAND 76 157 77
COLOUR_TEXT_REGION 76 157 77 157 51
STRAND 83 157 91
COLOUR_TEXT_REGION 83 157 91 157 51
HELIX 65 157 70
COLOUR_TEXT_REGION 65 157 70 157 50
HELIX 95 157 102
COLOUR_TEXT_REGION 95 157 102 157 50