SILENT_MODE BLOCK_FILE jp_i7Sqlkr.concise.blc MAX_NSEQ 702 MAX_INPUT_LEN 704 OUTPUT_FILE jp_i7Sqlkr.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 151 691 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 692 151 701 H SPACE SUB_CHARS 1 692 151 701 E SPACE SUB_CHARS 1 692 151 701 - SPACE STRAND 4 695 8 COLOUR_TEXT_REGION 4 695 8 695 51 STRAND 13 695 19 COLOUR_TEXT_REGION 13 695 19 695 51 STRAND 25 695 32 COLOUR_TEXT_REGION 25 695 32 695 51 STRAND 39 695 42 COLOUR_TEXT_REGION 39 695 42 695 51 STRAND 50 695 54 COLOUR_TEXT_REGION 50 695 54 695 51 STRAND 61 695 61 COLOUR_TEXT_REGION 61 695 61 695 51 STRAND 75 695 81 COLOUR_TEXT_REGION 75 695 81 695 51 STRAND 108 695 110 COLOUR_TEXT_REGION 108 695 110 695 51 STRAND 127 695 133 COLOUR_TEXT_REGION 127 695 133 695 51 HELIX 96 695 103 COLOUR_TEXT_REGION 96 695 103 695 50 HELIX 114 695 122 COLOUR_TEXT_REGION 114 695 122 695 50 HELIX 139 695 147 COLOUR_TEXT_REGION 139 695 147 695 50 STRAND 4 700 8 COLOUR_TEXT_REGION 4 700 8 700 51 STRAND 13 700 19 COLOUR_TEXT_REGION 13 700 19 700 51 STRAND 25 700 31 COLOUR_TEXT_REGION 25 700 31 700 51 STRAND 39 700 43 COLOUR_TEXT_REGION 39 700 43 700 51 STRAND 50 700 55 COLOUR_TEXT_REGION 50 700 55 700 51 STRAND 75 700 81 COLOUR_TEXT_REGION 75 700 81 700 51 STRAND 108 700 110 COLOUR_TEXT_REGION 108 700 110 700 51 STRAND 127 700 132 COLOUR_TEXT_REGION 127 700 132 700 51 HELIX 95 700 103 COLOUR_TEXT_REGION 95 700 103 700 50 HELIX 114 700 122 COLOUR_TEXT_REGION 114 700 122 700 50 HELIX 139 700 148 COLOUR_TEXT_REGION 139 700 148 700 50 STRAND 4 701 8 COLOUR_TEXT_REGION 4 701 8 701 51 STRAND 13 701 19 COLOUR_TEXT_REGION 13 701 19 701 51 STRAND 25 701 32 COLOUR_TEXT_REGION 25 701 32 701 51 STRAND 40 701 41 COLOUR_TEXT_REGION 40 701 41 701 51 STRAND 51 701 53 COLOUR_TEXT_REGION 51 701 53 701 51 STRAND 58 701 61 COLOUR_TEXT_REGION 58 701 61 701 51 STRAND 75 701 81 COLOUR_TEXT_REGION 75 701 81 701 51 STRAND 108 701 110 COLOUR_TEXT_REGION 108 701 110 701 51 STRAND 127 701 133 COLOUR_TEXT_REGION 127 701 133 701 51 HELIX 47 701 50 COLOUR_TEXT_REGION 47 701 50 701 50 HELIX 97 701 103 COLOUR_TEXT_REGION 97 701 103 701 50 HELIX 114 701 123 COLOUR_TEXT_REGION 114 701 123 701 50 HELIX 139 701 147 COLOUR_TEXT_REGION 139 701 147 701 50