SILENT_MODE BLOCK_FILE jp_9vrt7X0.concise.blc MAX_NSEQ 940 MAX_INPUT_LEN 942 OUTPUT_FILE jp_9vrt7X0.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 171 929 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 930 171 939 H SPACE SUB_CHARS 1 930 171 939 E SPACE SUB_CHARS 1 930 171 939 - SPACE STRAND 53 933 57 COLOUR_TEXT_REGION 53 933 57 933 51 STRAND 63 933 64 COLOUR_TEXT_REGION 63 933 64 933 51 STRAND 95 933 97 COLOUR_TEXT_REGION 95 933 97 933 51 STRAND 167 933 169 COLOUR_TEXT_REGION 167 933 169 933 51 HELIX 6 933 15 COLOUR_TEXT_REGION 6 933 15 933 50 HELIX 22 933 42 COLOUR_TEXT_REGION 22 933 42 933 50 HELIX 70 933 85 COLOUR_TEXT_REGION 70 933 85 933 50 HELIX 107 933 121 COLOUR_TEXT_REGION 107 933 121 933 50 HELIX 134 933 143 COLOUR_TEXT_REGION 134 933 143 933 50 HELIX 148 933 155 COLOUR_TEXT_REGION 148 933 155 933 50 HELIX 162 933 166 COLOUR_TEXT_REGION 162 933 166 933 50 STRAND 53 938 57 COLOUR_TEXT_REGION 53 938 57 938 51 STRAND 62 938 66 COLOUR_TEXT_REGION 62 938 66 938 51 STRAND 95 938 97 COLOUR_TEXT_REGION 95 938 97 938 51 STRAND 131 938 132 COLOUR_TEXT_REGION 131 938 132 938 51 STRAND 168 938 169 COLOUR_TEXT_REGION 168 938 169 938 51 HELIX 6 938 15 COLOUR_TEXT_REGION 6 938 15 938 50 HELIX 22 938 41 COLOUR_TEXT_REGION 22 938 41 938 50 HELIX 71 938 85 COLOUR_TEXT_REGION 71 938 85 938 50 HELIX 106 938 120 COLOUR_TEXT_REGION 106 938 120 938 50 HELIX 134 938 143 COLOUR_TEXT_REGION 134 938 143 938 50 HELIX 148 938 155 COLOUR_TEXT_REGION 148 938 155 938 50 HELIX 160 938 167 COLOUR_TEXT_REGION 160 938 167 938 50 STRAND 52 939 56 COLOUR_TEXT_REGION 52 939 56 939 51 STRAND 95 939 97 COLOUR_TEXT_REGION 95 939 97 939 51 STRAND 165 939 170 COLOUR_TEXT_REGION 165 939 170 939 51 HELIX 6 939 16 COLOUR_TEXT_REGION 6 939 16 939 50 HELIX 21 939 42 COLOUR_TEXT_REGION 21 939 42 939 50 HELIX 70 939 81 COLOUR_TEXT_REGION 70 939 81 939 50 HELIX 108 939 121 COLOUR_TEXT_REGION 108 939 121 939 50 HELIX 134 939 143 COLOUR_TEXT_REGION 134 939 143 939 50 HELIX 148 939 155 COLOUR_TEXT_REGION 148 939 155 939 50 HELIX 163 939 164 COLOUR_TEXT_REGION 163 939 164 939 50