SILENT_MODE
BLOCK_FILE jp_JpVeFO_.concise.blc
MAX_NSEQ 208
MAX_INPUT_LEN 210
OUTPUT_FILE jp_JpVeFO_.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 245 197   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 198 245 207 H SPACE
SUB_CHARS 1 198 245 207 E SPACE
SUB_CHARS 1 198 245 207 - SPACE
STRAND 70 201 72
COLOUR_TEXT_REGION 70 201 72 201 51
HELIX 13 201 26
COLOUR_TEXT_REGION 13 201 26 201 50
HELIX 34 201 51
COLOUR_TEXT_REGION 34 201 51 201 50
HELIX 86 201 103
COLOUR_TEXT_REGION 86 201 103 201 50
HELIX 106 201 121
COLOUR_TEXT_REGION 106 201 121 201 50
HELIX 143 201 152
COLOUR_TEXT_REGION 143 201 152 201 50
HELIX 172 201 190
COLOUR_TEXT_REGION 172 201 190 201 50
HELIX 197 201 199
COLOUR_TEXT_REGION 197 201 199 201 50
HELIX 209 201 242
COLOUR_TEXT_REGION 209 201 242 201 50
STRAND 70 206 72
COLOUR_TEXT_REGION 70 206 72 206 51
STRAND 165 206 166
COLOUR_TEXT_REGION 165 206 166 206 51
HELIX 13 206 26
COLOUR_TEXT_REGION 13 206 26 206 50
HELIX 34 206 51
COLOUR_TEXT_REGION 34 206 51 206 50
HELIX 84 206 103
COLOUR_TEXT_REGION 84 206 103 206 50
HELIX 106 206 122
COLOUR_TEXT_REGION 106 206 122 206 50
HELIX 143 206 153
COLOUR_TEXT_REGION 143 206 153 206 50
HELIX 172 206 191
COLOUR_TEXT_REGION 172 206 191 206 50
HELIX 211 206 242
COLOUR_TEXT_REGION 211 206 242 206 50
STRAND 69 207 72
COLOUR_TEXT_REGION 69 207 72 207 51
HELIX 14 207 26
COLOUR_TEXT_REGION 14 207 26 207 50
HELIX 33 207 51
COLOUR_TEXT_REGION 33 207 51 207 50
HELIX 86 207 103
COLOUR_TEXT_REGION 86 207 103 207 50
HELIX 106 207 120
COLOUR_TEXT_REGION 106 207 120 207 50
HELIX 143 207 151
COLOUR_TEXT_REGION 143 207 151 207 50
HELIX 172 207 189
COLOUR_TEXT_REGION 172 207 189 207 50
HELIX 196 207 201
COLOUR_TEXT_REGION 196 207 201 207 50
HELIX 209 207 242
COLOUR_TEXT_REGION 209 207 242 207 50