Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts A R N D C Q E G H I L K M F P S T W Y V A R N D C Q E G H I L K M F P S T W Y V 1 E -2 -1 -1 2 -5 1 6 -3 -1 -4 -4 1 -3 -4 -2 -1 -2 -4 -3 -4 0 0 0 5 0 0 91 0 0 0 0 4 0 0 0 0 0 0 0 0 1.13 0.35 2 Y -2 -3 -4 -4 -3 -3 -1 -4 -1 3 0 -3 -1 1 -4 -3 -2 0 7 2 0 0 0 0 0 0 5 0 0 21 7 0 0 0 0 0 1 0 51 14 0.72 0.37 3 F -3 -4 -4 -4 2 -4 -4 -4 -1 -1 -1 -4 -1 7 -5 -2 -3 0 5 -2 0 0 0 0 5 0 0 0 0 0 0 0 0 73 0 3 0 0 19 0 1.14 0.36 4 T -1 -1 -1 -2 -2 -2 -2 -3 -3 0 -2 -2 -2 -3 -2 1 6 -3 0 0 0 3 0 0 0 0 0 0 0 5 0 0 0 0 0 3 82 0 4 4 0.77 0.36 5 L -3 -3 -5 -5 -2 -3 -4 -5 -4 1 5 -4 1 1 -4 -4 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 5 91 0 0 3 0 0 0 0 0 0 0.88 0.36 6 Q -2 1 -1 -2 -4 6 1 -3 2 -4 -3 3 -2 -4 -2 -1 -2 -3 -2 -3 0 3 0 0 0 68 0 0 6 0 0 22 0 0 0 0 0 0 0 0 0.95 0.38 7 I -2 -4 -4 -4 -2 -4 -4 -5 -5 6 0 -4 0 -1 -4 -3 -2 -4 -2 3 0 0 0 0 0 0 0 0 0 76 0 0 0 0 0 0 0 0 0 24 0.89 0.38 8 R -2 7 -1 -3 -4 0 -1 -3 3 -4 -3 2 -2 -4 -3 -2 -1 -4 -2 -4 0 81 0 0 0 0 0 0 10 0 0 5 0 0 0 0 4 0 0 0 1.10 0.38 9 G -1 -4 -1 -2 -4 -3 -3 7 -3 -5 -5 -3 -4 -4 -3 -1 -3 -4 -4 -4 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1.56 0.38 10 R -3 6 -1 -3 -5 0 -1 -3 3 -4 -3 2 -2 -2 -3 -2 -2 -3 0 -4 0 75 0 0 0 0 0 0 10 0 2 9 0 1 0 0 0 0 3 0 1.00 0.38 11 E -1 0 -1 2 -4 1 5 -3 0 -4 -4 2 -3 -4 -2 0 -2 -4 -3 -3 2 4 0 7 0 2 60 0 2 0 0 16 0 0 0 6 0 0 0 0 0.73 0.36 12 R -2 7 0 -2 2 0 -1 -3 -1 -4 -3 2 -2 -4 -3 -2 -2 -4 -3 -3 0 80 3 0 6 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 1.03 0.36 13 F -3 -3 -3 -4 -3 -3 -3 -4 0 -2 -1 -3 -1 6 -4 -3 -3 1 7 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 43 0 0 0 0 52 0 1.19 0.36 14 E -2 0 0 0 -4 1 6 -3 -1 -4 -3 2 -3 -4 -2 -1 -2 -4 -3 -3 0 3 4 0 0 0 76 0 0 0 2 11 0 0 0 0 0 0 0 0 0.89 0.36 15 M -2 -3 -3 -4 -3 -2 -3 -4 -3 1 1 -3 8 1 -4 -2 0 -3 -2 0 0 0 0 0 0 0 0 0 0 4 3 0 79 4 0 0 5 0 0 4 0.95 0.38 16 F -3 -4 -4 -5 -3 -4 -4 -5 -3 1 3 -4 0 6 -5 -4 -3 -1 1 -1 0 0 0 0 0 0 0 0 0 8 40 0 0 52 0 0 0 0 0 0 0.86 0.38 17 R -2 5 -2 -2 -4 2 -1 -3 -2 -3 -1 5 -2 -4 -3 -1 -2 1 -3 -3 0 33 0 0 0 8 0 0 0 0 9 47 0 0 0 2 0 2 0 0 0.70 0.38 18 E -2 1 0 0 -4 2 4 -3 -1 -4 -4 5 -3 -4 -2 -1 0 -4 -3 -3 0 3 2 1 0 5 39 0 0 0 0 45 0 0 0 0 5 0 0 2 0.70 0.38 19 L -3 -4 -5 -5 -2 -3 -4 -5 -4 4 4 -4 2 0 -4 -4 -2 -3 -2 1 0 0 0 0 0 0 0 0 0 35 58 0 5 3 0 0 0 0 0 0 0.73 0.38 20 N -3 -1 7 0 -4 -1 -1 -2 0 -4 -5 0 -3 -4 -3 0 -1 -5 -3 -4 0 0 95 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 1.31 0.38 21 E -1 -2 0 4 -5 0 6 -3 -1 -4 -4 -1 -3 -5 -2 -1 -2 -5 -4 -4 2 0 2 30 0 0 65 0 0 0 0 0 0 0 0 0 0 0 0 0 1.01 0.38 22 A 5 -3 -2 -3 -2 -2 -2 2 -3 -3 -3 -2 -2 -4 -2 2 -1 -4 -3 -1 67 0 0 0 0 0 0 18 0 0 0 0 0 0 0 12 0 0 0 3 0.67 0.38 23 L -3 -3 -5 -5 -2 -3 -4 -5 -4 1 5 -4 1 1 -4 -4 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 0 95 0 0 5 0 0 0 0 0 0 0.93 0.38 24 E -2 -1 -1 2 -5 2 6 -3 -1 -4 -4 0 -3 -5 -2 -1 -2 -4 -3 -4 0 0 0 9 0 3 88 0 0 0 0 0 0 0 0 0 0 0 0 0 1.15 0.38 25 L -2 -3 -5 -5 -2 -3 -4 -5 -4 1 5 -4 2 2 -4 -3 -2 -2 -1 0 2 0 0 0 0 0 0 0 0 1 79 0 3 11 0 0 0 0 0 4 0.77 0.38 26 K 0 1 -1 -2 -3 2 -1 -3 -2 -3 0 5 1 -3 -2 1 -1 -4 -3 -2 8 2 0 0 0 12 0 0 0 0 11 52 5 0 0 11 0 0 0 0 0.48 0.38 27 D -3 -2 0 6 -5 0 4 -3 -2 -4 -5 -1 -4 -5 -3 -1 -2 -5 -4 -4 0 0 0 70 0 0 30 0 0 0 0 0 0 0 0 0 0 0 0 0 1.19 0.38 28 A 5 -2 -2 -3 -2 -2 -2 1 -3 -2 -3 0 -2 -3 -2 2 -1 -4 -3 0 69 0 0 0 0 0 0 8 0 0 0 4 0 0 0 12 0 0 0 7 0.57 0.34 29 Q 0 0 -1 -2 -3 5 1 -1 3 -2 -1 1 2 -3 -3 -1 -2 -3 -2 -1 8 2 0 0 0 46 5 5 8 0 5 9 7 0 0 0 0 0 0 5 0.45 0.33 30 A 4 -2 0 0 -2 -1 0 0 -2 -3 -3 -1 -2 -4 -2 3 0 -4 -3 -2 51 0 4 5 0 0 4 6 0 0 0 0 0 0 0 26 4 0 0 0 0.48 0.33 31 G 3 -3 -2 -2 -2 -2 -2 5 -3 -4 -4 -2 -3 -4 -2 0 -2 -3 -3 -3 38 0 0 0 0 0 0 62 0 0 0 0 0 0 0 0 0 0 0 0 0.87 0.26 K Lambda Standard Ungapped 0.1394 0.3226 Standard Gapped 0.0410 0.2670 PSI Ungapped 0.1888 0.3191 PSI Gapped 0.0578 0.2670