SILENT_MODE
BLOCK_FILE jp_vSKn9iq.concise.blc
MAX_NSEQ 808
MAX_INPUT_LEN 810
OUTPUT_FILE jp_vSKn9iq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 130 797   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 798 130 807 H SPACE
SUB_CHARS 1 798 130 807 E SPACE
SUB_CHARS 1 798 130 807 - SPACE
STRAND 5 801 11
COLOUR_TEXT_REGION 5 801 11 801 51
STRAND 22 801 33
COLOUR_TEXT_REGION 22 801 33 801 51
STRAND 42 801 46
COLOUR_TEXT_REGION 42 801 46 801 51
STRAND 53 801 54
COLOUR_TEXT_REGION 53 801 54 801 51
STRAND 67 801 72
COLOUR_TEXT_REGION 67 801 72 801 51
STRAND 76 801 82
COLOUR_TEXT_REGION 76 801 82 801 51
STRAND 88 801 100
COLOUR_TEXT_REGION 88 801 100 801 51
STRAND 107 801 113
COLOUR_TEXT_REGION 107 801 113 801 51
STRAND 120 801 126
COLOUR_TEXT_REGION 120 801 126 801 51
HELIX 60 801 61
COLOUR_TEXT_REGION 60 801 61 801 50
STRAND 5 806 11
COLOUR_TEXT_REGION 5 806 11 806 51
STRAND 22 806 33
COLOUR_TEXT_REGION 22 806 33 806 51
STRAND 42 806 47
COLOUR_TEXT_REGION 42 806 47 806 51
STRAND 53 806 54
COLOUR_TEXT_REGION 53 806 54 806 51
STRAND 67 806 73
COLOUR_TEXT_REGION 67 806 73 806 51
STRAND 76 806 82
COLOUR_TEXT_REGION 76 806 82 806 51
STRAND 88 806 100
COLOUR_TEXT_REGION 88 806 100 806 51
STRAND 108 806 113
COLOUR_TEXT_REGION 108 806 113 806 51
STRAND 120 806 126
COLOUR_TEXT_REGION 120 806 126 806 51
STRAND 5 807 11
COLOUR_TEXT_REGION 5 807 11 807 51
STRAND 22 807 33
COLOUR_TEXT_REGION 22 807 33 807 51
STRAND 41 807 46
COLOUR_TEXT_REGION 41 807 46 807 51
STRAND 53 807 54
COLOUR_TEXT_REGION 53 807 54 807 51
STRAND 66 807 72
COLOUR_TEXT_REGION 66 807 72 807 51
STRAND 76 807 82
COLOUR_TEXT_REGION 76 807 82 807 51
STRAND 89 807 101
COLOUR_TEXT_REGION 89 807 101 807 51
STRAND 107 807 114
COLOUR_TEXT_REGION 107 807 114 807 51
STRAND 120 807 125
COLOUR_TEXT_REGION 120 807 125 807 51
HELIX 58 807 63
COLOUR_TEXT_REGION 58 807 63 807 50