SILENT_MODE BLOCK_FILE jp_RyfPC5u.concise.blc MAX_NSEQ 917 MAX_INPUT_LEN 919 OUTPUT_FILE jp_RyfPC5u.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 210 906 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 907 210 916 H SPACE SUB_CHARS 1 907 210 916 E SPACE SUB_CHARS 1 907 210 916 - SPACE STRAND 8 910 12 COLOUR_TEXT_REGION 8 910 12 910 51 STRAND 17 910 22 COLOUR_TEXT_REGION 17 910 22 910 51 STRAND 57 910 61 COLOUR_TEXT_REGION 57 910 61 910 51 STRAND 75 910 82 COLOUR_TEXT_REGION 75 910 82 910 51 STRAND 88 910 91 COLOUR_TEXT_REGION 88 910 91 910 51 STRAND 108 910 113 COLOUR_TEXT_REGION 108 910 113 910 51 STRAND 119 910 124 COLOUR_TEXT_REGION 119 910 124 910 51 STRAND 128 910 131 COLOUR_TEXT_REGION 128 910 131 910 51 STRAND 156 910 161 COLOUR_TEXT_REGION 156 910 161 910 51 STRAND 170 910 176 COLOUR_TEXT_REGION 170 910 176 910 51 STRAND 197 910 202 COLOUR_TEXT_REGION 197 910 202 910 51 HELIX 25 910 31 COLOUR_TEXT_REGION 25 910 31 910 50 HELIX 35 910 44 COLOUR_TEXT_REGION 35 910 44 910 50 HELIX 96 910 104 COLOUR_TEXT_REGION 96 910 104 910 50 HELIX 141 910 151 COLOUR_TEXT_REGION 141 910 151 910 50 HELIX 188 910 192 COLOUR_TEXT_REGION 188 910 192 910 50 STRAND 8 915 12 COLOUR_TEXT_REGION 8 915 12 915 51 STRAND 17 915 22 COLOUR_TEXT_REGION 17 915 22 915 51 STRAND 57 915 61 COLOUR_TEXT_REGION 57 915 61 915 51 STRAND 75 915 81 COLOUR_TEXT_REGION 75 915 81 915 51 STRAND 87 915 92 COLOUR_TEXT_REGION 87 915 92 915 51 STRAND 108 915 114 COLOUR_TEXT_REGION 108 915 114 915 51 STRAND 119 915 124 COLOUR_TEXT_REGION 119 915 124 915 51 STRAND 127 915 132 COLOUR_TEXT_REGION 127 915 132 915 51 STRAND 157 915 161 COLOUR_TEXT_REGION 157 915 161 915 51 STRAND 171 915 176 COLOUR_TEXT_REGION 171 915 176 915 51 STRAND 197 915 202 COLOUR_TEXT_REGION 197 915 202 915 51 HELIX 25 915 31 COLOUR_TEXT_REGION 25 915 31 915 50 HELIX 35 915 44 COLOUR_TEXT_REGION 35 915 44 915 50 HELIX 96 915 104 COLOUR_TEXT_REGION 96 915 104 915 50 HELIX 141 915 151 COLOUR_TEXT_REGION 141 915 151 915 50 HELIX 188 915 193 COLOUR_TEXT_REGION 188 915 193 915 50 STRAND 7 916 12 COLOUR_TEXT_REGION 7 916 12 916 51 STRAND 17 916 22 COLOUR_TEXT_REGION 17 916 22 916 51 STRAND 57 916 61 COLOUR_TEXT_REGION 57 916 61 916 51 STRAND 76 916 82 COLOUR_TEXT_REGION 76 916 82 916 51 STRAND 108 916 112 COLOUR_TEXT_REGION 108 916 112 916 51 STRAND 118 916 124 COLOUR_TEXT_REGION 118 916 124 916 51 STRAND 156 916 161 COLOUR_TEXT_REGION 156 916 161 916 51 STRAND 168 916 173 COLOUR_TEXT_REGION 168 916 173 916 51 STRAND 188 916 192 COLOUR_TEXT_REGION 188 916 192 916 51 STRAND 197 916 202 COLOUR_TEXT_REGION 197 916 202 916 51 HELIX 25 916 30 COLOUR_TEXT_REGION 25 916 30 916 50 HELIX 36 916 45 COLOUR_TEXT_REGION 36 916 45 916 50 HELIX 96 916 103 COLOUR_TEXT_REGION 96 916 103 916 50 HELIX 141 916 151 COLOUR_TEXT_REGION 141 916 151 916 50 HELIX 174 916 176 COLOUR_TEXT_REGION 174 916 176 916 50