SILENT_MODE
BLOCK_FILE jp_zGwnPKq.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_zGwnPKq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 67 15   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 16 67 25 H SPACE
SUB_CHARS 1 16 67 25 E SPACE
SUB_CHARS 1 16 67 25 - SPACE
STRAND 3 19 10
COLOUR_TEXT_REGION 3 19 10 19 51
STRAND 26 19 31
COLOUR_TEXT_REGION 26 19 31 19 51
STRAND 50 19 56
COLOUR_TEXT_REGION 50 19 56 19 51
HELIX 16 19 23
COLOUR_TEXT_REGION 16 19 23 19 50
HELIX 36 19 46
COLOUR_TEXT_REGION 36 19 46 19 50
STRAND 3 24 10
COLOUR_TEXT_REGION 3 24 10 24 51
STRAND 25 24 31
COLOUR_TEXT_REGION 25 24 31 24 51
STRAND 50 24 55
COLOUR_TEXT_REGION 50 24 55 24 51
HELIX 16 24 24
COLOUR_TEXT_REGION 16 24 24 24 50
HELIX 36 24 46
COLOUR_TEXT_REGION 36 24 46 24 50
STRAND 4 25 9
COLOUR_TEXT_REGION 4 25 9 25 51
STRAND 26 25 31
COLOUR_TEXT_REGION 26 25 31 25 51
STRAND 50 25 57
COLOUR_TEXT_REGION 50 25 57 25 51
HELIX 16 25 22
COLOUR_TEXT_REGION 16 25 22 25 50
HELIX 36 25 46
COLOUR_TEXT_REGION 36 25 46 25 50