QUERY                  : GRLFKITACVPSQTRIRTQRELQNTYFTKLVPYENWFREQQRIQKMGGKIVKVELATGKQGINTGLA : QUERY 
UniRef90_P06114        : -RMFRITACLPSPSKIRTQRELQNTFFTKLVPYDAWFREQQRIQKLGGKIIKVELATGRPNTNTGL- : UniRef90_P06114
UniRef90_K9YGQ1        : -RMFKVTACVPSQTRIRTQRELQNTYFTKLVPYDNWFKEQQRIQKMGGSIVKVQLVTGKQGANTGL- : UniRef90_K9YGQ1
UniRef90_M2Y574        : GRCFKITYCQPSQSRGFSGRELQNVYTTKLVPFSSWYAEQQRIMKMGGKIFKVELAVGKKERNVG-- : UniRef90_M2Y574
UniRef90_UPI00046F9E10 : -RLFKITACLPTQRNIRAQRELQNTYFTKWVPYDSWFAEQQRIQKQGGKILKVELCAGRQQDNVGL- : UniRef90_UPI00046F9E10
UniRef90_K9PC45        : -RLFKITACIPCPEKVRSQRELQNTYFTKWVPYHSWFAEQQRIMKQGGRILKVELATGRRQQNCG-- : UniRef90_K9PC45
UniRef90_Q7NL78        : SRYFKVTACIPSLKRVRTGRELQNTFFTKLVPYENWFTEQQRIQKAGGKVLSVKLFTGVQGANTGVG : UniRef90_Q7NL78
UniRef90_UPI000477A647 : --MFKITACFPTTTNIRTQRELQNTYVTKCVNYDNWFAEQQRIQKAGGKILKVELTTGSKGVNVGIS : UniRef90_UPI000477A647
UniRef90_R7QFE8        : -RSFKVTFVLPSESRLFTFRELQNVYTTKIVPFSSWYAEQQRIQKMGGKILKVELSSGGQMRSVG-- : UniRef90_R7QFE8
UniRef90_M1UUN7        : -RMFKVSYVLPSQSRVDSGRELQNVATTKMVPFTSWYSEQQRIMKMGGRITKVELASGVPQRNVG-- : UniRef90_M1UUN7
UniRef90_Q55095        : -RMFKITACVPSQSRIRTQRELQNTYFTKLVSYDNWFNEQQRIMKMGGKI----------------- : UniRef90_Q55095
UniRef90_Q8GUE6        : ARKFKVTVVMPAEVRDQTVALFTNTYYTKYVDFSNWFAEQQKIQKAGGKILKVKLANGNRWT----- : UniRef90_Q8GUE6

                       : 1---------11--------21--------31--------41--------51--------61----- :
OrigSeq                : GRLFKITACVPSQTRIRTQRELQNTYFTKLVPYENWFREQQRIQKMGGKIVKVELATGKQGINTGLA : OrigSeq

Jnet                   : --EEEEEEEE-----HHHHHHHH--EEEEEE----HHHHHHHHHHH---EEEEEEE----------- : Jnet
jhmm                   : --EEEEEEEE-----HHHHHHHHHEEEEEEE----HHHHHHHHHHH---EEEEEE------------ : jhmm
jpssm                  : ---EEEEEE------HHHHHHH---EEEEEE----HHHHHHHHHHH---EEEEEEEE---------- : jpssm

Lupas 14               : ------------------------------------------------------------------- : Lupas 14
Lupas 21               : ------------------------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---B-BBBBBBB-----BB--B--BBBBBBB-B--BB--B--B----B-BB-B-BB--------B-- : Jnet_25
Jnet_5                 : -----B-BB-----------------B---B-----------B------BB-B-B------------ : Jnet_5
Jnet_0                 : ------------------------------------------------------------------- : Jnet_0
Jnet Rel               : 9906899840787501367775220378874478617899999874584589988235677777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.