SILENT_MODE
BLOCK_FILE jp_8V_s0pq.concise.blc
MAX_NSEQ 388
MAX_INPUT_LEN 390
OUTPUT_FILE jp_8V_s0pq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 80 377   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 378 80 387 H SPACE
SUB_CHARS 1 378 80 387 E SPACE
SUB_CHARS 1 378 80 387 - SPACE
STRAND 15 381 16
COLOUR_TEXT_REGION 15 381 16 381 51
STRAND 22 381 26
COLOUR_TEXT_REGION 22 381 26 381 51
STRAND 30 381 33
COLOUR_TEXT_REGION 30 381 33 381 51
STRAND 37 381 38
COLOUR_TEXT_REGION 37 381 38 381 51
STRAND 50 381 55
COLOUR_TEXT_REGION 50 381 55 381 51
STRAND 64 381 68
COLOUR_TEXT_REGION 64 381 68 381 51
STRAND 73 381 78
COLOUR_TEXT_REGION 73 381 78 381 51
HELIX 2 381 10
COLOUR_TEXT_REGION 2 381 10 381 50
HELIX 41 381 46
COLOUR_TEXT_REGION 41 381 46 381 50
STRAND 15 386 16
COLOUR_TEXT_REGION 15 386 16 386 51
STRAND 22 386 26
COLOUR_TEXT_REGION 22 386 26 386 51
STRAND 30 386 33
COLOUR_TEXT_REGION 30 386 33 386 51
STRAND 37 386 38
COLOUR_TEXT_REGION 37 386 38 386 51
STRAND 50 386 55
COLOUR_TEXT_REGION 50 386 55 386 51
STRAND 64 386 68
COLOUR_TEXT_REGION 64 386 68 386 51
STRAND 73 386 78
COLOUR_TEXT_REGION 73 386 78 386 51
HELIX 2 386 9
COLOUR_TEXT_REGION 2 386 9 386 50
HELIX 41 386 46
COLOUR_TEXT_REGION 41 386 46 386 50
STRAND 15 387 17
COLOUR_TEXT_REGION 15 387 17 387 51
STRAND 22 387 27
COLOUR_TEXT_REGION 22 387 27 387 51
STRAND 29 387 34
COLOUR_TEXT_REGION 29 387 34 387 51
STRAND 37 387 39
COLOUR_TEXT_REGION 37 387 39 387 51
STRAND 50 387 55
COLOUR_TEXT_REGION 50 387 55 387 51
STRAND 64 387 68
COLOUR_TEXT_REGION 64 387 68 387 51
STRAND 73 387 78
COLOUR_TEXT_REGION 73 387 78 387 51
HELIX 3 387 10
COLOUR_TEXT_REGION 3 387 10 387 50
HELIX 40 387 46
COLOUR_TEXT_REGION 40 387 46 387 50