SILENT_MODE
BLOCK_FILE jp_rkqBHhq.concise.blc
MAX_NSEQ 250
MAX_INPUT_LEN 252
OUTPUT_FILE jp_rkqBHhq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 177 239   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 240 177 249 H SPACE
SUB_CHARS 1 240 177 249 E SPACE
SUB_CHARS 1 240 177 249 - SPACE
HELIX 4 243 46
COLOUR_TEXT_REGION 4 243 46 243 50
HELIX 49 243 106
COLOUR_TEXT_REGION 49 243 106 243 50
HELIX 116 243 146
COLOUR_TEXT_REGION 116 243 146 243 50
HELIX 158 243 174
COLOUR_TEXT_REGION 158 243 174 243 50
HELIX 4 248 46
COLOUR_TEXT_REGION 4 248 46 248 50
HELIX 52 248 106
COLOUR_TEXT_REGION 52 248 106 248 50
HELIX 116 248 146
COLOUR_TEXT_REGION 116 248 146 248 50
HELIX 158 248 174
COLOUR_TEXT_REGION 158 248 174 248 50
HELIX 4 249 91
COLOUR_TEXT_REGION 4 249 91 249 50
HELIX 95 249 105
COLOUR_TEXT_REGION 95 249 105 249 50
HELIX 117 249 145
COLOUR_TEXT_REGION 117 249 145 249 50
HELIX 158 249 174
COLOUR_TEXT_REGION 158 249 174 249 50