SILENT_MODE
BLOCK_FILE jp_dr8IN2r.concise.blc
MAX_NSEQ 174
MAX_INPUT_LEN 176
OUTPUT_FILE jp_dr8IN2r.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 124 163   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 164 124 173 H SPACE
SUB_CHARS 1 164 124 173 E SPACE
SUB_CHARS 1 164 124 173 - SPACE
HELIX 2 167 9
COLOUR_TEXT_REGION 2 167 9 167 50
HELIX 14 167 22
COLOUR_TEXT_REGION 14 167 22 167 50
HELIX 29 167 36
COLOUR_TEXT_REGION 29 167 36 167 50
HELIX 51 167 72
COLOUR_TEXT_REGION 51 167 72 167 50
HELIX 78 167 94
COLOUR_TEXT_REGION 78 167 94 167 50
HELIX 99 167 120
COLOUR_TEXT_REGION 99 167 120 167 50
STRAND 79 172 80
COLOUR_TEXT_REGION 79 172 80 172 51
HELIX 2 172 9
COLOUR_TEXT_REGION 2 172 9 172 50
HELIX 15 172 22
COLOUR_TEXT_REGION 15 172 22 172 50
HELIX 29 172 39
COLOUR_TEXT_REGION 29 172 39 172 50
HELIX 52 172 72
COLOUR_TEXT_REGION 52 172 72 172 50
HELIX 81 172 81
COLOUR_TEXT_REGION 81 172 81 172 50
HELIX 83 172 95
COLOUR_TEXT_REGION 83 172 95 172 50
HELIX 99 172 120
COLOUR_TEXT_REGION 99 172 120 172 50
HELIX 2 173 9
COLOUR_TEXT_REGION 2 173 9 173 50
HELIX 13 173 22
COLOUR_TEXT_REGION 13 173 22 173 50
HELIX 29 173 35
COLOUR_TEXT_REGION 29 173 35 173 50
HELIX 51 173 71
COLOUR_TEXT_REGION 51 173 71 173 50
HELIX 77 173 93
COLOUR_TEXT_REGION 77 173 93 173 50
HELIX 99 173 120
COLOUR_TEXT_REGION 99 173 120 173 50