SILENT_MODE
BLOCK_FILE jp_LdMoW50.concise.blc
MAX_NSEQ 386
MAX_INPUT_LEN 388
OUTPUT_FILE jp_LdMoW50.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 108 375   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 376 108 385 H SPACE
SUB_CHARS 1 376 108 385 E SPACE
SUB_CHARS 1 376 108 385 - SPACE
HELIX 3 379 15
COLOUR_TEXT_REGION 3 379 15 379 50
HELIX 33 379 42
COLOUR_TEXT_REGION 33 379 42 379 50
HELIX 58 379 72
COLOUR_TEXT_REGION 58 379 72 379 50
HELIX 91 379 106
COLOUR_TEXT_REGION 91 379 106 379 50
STRAND 22 384 22
COLOUR_TEXT_REGION 22 384 22 384 51
HELIX 3 384 14
COLOUR_TEXT_REGION 3 384 14 384 50
HELIX 33 384 41
COLOUR_TEXT_REGION 33 384 41 384 50
HELIX 58 384 71
COLOUR_TEXT_REGION 58 384 71 384 50
HELIX 92 384 106
COLOUR_TEXT_REGION 92 384 106 384 50
HELIX 3 385 15
COLOUR_TEXT_REGION 3 385 15 385 50
HELIX 34 385 46
COLOUR_TEXT_REGION 34 385 46 385 50
HELIX 58 385 72
COLOUR_TEXT_REGION 58 385 72 385 50
HELIX 91 385 106
COLOUR_TEXT_REGION 91 385 106 385 50