SILENT_MODE BLOCK_FILE jp_uRRjhLo.concise.blc MAX_NSEQ 338 MAX_INPUT_LEN 340 OUTPUT_FILE jp_uRRjhLo.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 99 327 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 328 99 337 H SPACE SUB_CHARS 1 328 99 337 E SPACE SUB_CHARS 1 328 99 337 - SPACE STRAND 2 331 7 COLOUR_TEXT_REGION 2 331 7 331 51 STRAND 11 331 16 COLOUR_TEXT_REGION 11 331 16 331 51 STRAND 21 331 25 COLOUR_TEXT_REGION 21 331 25 331 51 STRAND 31 331 32 COLOUR_TEXT_REGION 31 331 32 331 51 STRAND 60 331 63 COLOUR_TEXT_REGION 60 331 63 331 51 STRAND 70 331 74 COLOUR_TEXT_REGION 70 331 74 331 51 HELIX 33 331 39 COLOUR_TEXT_REGION 33 331 39 331 50 HELIX 48 331 51 COLOUR_TEXT_REGION 48 331 51 331 50 HELIX 77 331 86 COLOUR_TEXT_REGION 77 331 86 331 50 HELIX 91 331 95 COLOUR_TEXT_REGION 91 331 95 331 50 STRAND 0 336 7 COLOUR_TEXT_REGION 0 336 7 336 51 STRAND 11 336 17 COLOUR_TEXT_REGION 11 336 17 336 51 STRAND 21 336 25 COLOUR_TEXT_REGION 21 336 25 336 51 STRAND 61 336 62 COLOUR_TEXT_REGION 61 336 62 336 51 STRAND 70 336 75 COLOUR_TEXT_REGION 70 336 75 336 51 HELIX 33 336 39 COLOUR_TEXT_REGION 33 336 39 336 50 HELIX 48 336 51 COLOUR_TEXT_REGION 48 336 51 336 50 HELIX 77 336 86 COLOUR_TEXT_REGION 77 336 86 336 50 HELIX 91 336 96 COLOUR_TEXT_REGION 91 336 96 336 50 STRAND 2 337 7 COLOUR_TEXT_REGION 2 337 7 337 51 STRAND 11 337 16 COLOUR_TEXT_REGION 11 337 16 337 51 STRAND 21 337 25 COLOUR_TEXT_REGION 21 337 25 337 51 STRAND 31 337 32 COLOUR_TEXT_REGION 31 337 32 337 51 STRAND 59 337 64 COLOUR_TEXT_REGION 59 337 64 337 51 STRAND 69 337 74 COLOUR_TEXT_REGION 69 337 74 337 51 STRAND 91 337 95 COLOUR_TEXT_REGION 91 337 95 337 51 HELIX 33 337 39 COLOUR_TEXT_REGION 33 337 39 337 50 HELIX 48 337 52 COLOUR_TEXT_REGION 48 337 52 337 50 HELIX 77 337 86 COLOUR_TEXT_REGION 77 337 86 337 50