SILENT_MODE
BLOCK_FILE jp_JPYACb6.concise.blc
MAX_NSEQ 179
MAX_INPUT_LEN 181
OUTPUT_FILE jp_JPYACb6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 132 168   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 169 132 178 H SPACE
SUB_CHARS 1 169 132 178 E SPACE
SUB_CHARS 1 169 132 178 - SPACE
STRAND 125 172 127
COLOUR_TEXT_REGION 125 172 127 172 51
HELIX 5 172 6
COLOUR_TEXT_REGION 5 172 6 172 50
HELIX 21 172 36
COLOUR_TEXT_REGION 21 172 36 172 50
HELIX 40 172 56
COLOUR_TEXT_REGION 40 172 56 172 50
HELIX 61 172 69
COLOUR_TEXT_REGION 61 172 69 172 50
HELIX 72 172 78
COLOUR_TEXT_REGION 72 172 78 172 50
HELIX 82 172 91
COLOUR_TEXT_REGION 82 172 91 172 50
HELIX 96 172 104
COLOUR_TEXT_REGION 96 172 104 172 50
HELIX 108 172 117
COLOUR_TEXT_REGION 108 172 117 172 50
STRAND 125 177 127
COLOUR_TEXT_REGION 125 177 127 177 51
HELIX 21 177 37
COLOUR_TEXT_REGION 21 177 37 177 50
HELIX 40 177 56
COLOUR_TEXT_REGION 40 177 56 177 50
HELIX 61 177 69
COLOUR_TEXT_REGION 61 177 69 177 50
HELIX 72 177 78
COLOUR_TEXT_REGION 72 177 78 177 50
HELIX 82 177 91
COLOUR_TEXT_REGION 82 177 91 177 50
HELIX 96 177 104
COLOUR_TEXT_REGION 96 177 104 177 50
HELIX 108 177 117
COLOUR_TEXT_REGION 108 177 117 177 50
STRAND 126 178 126
COLOUR_TEXT_REGION 126 178 126 178 51
HELIX 3 178 7
COLOUR_TEXT_REGION 3 178 7 178 50
HELIX 21 178 36
COLOUR_TEXT_REGION 21 178 36 178 50
HELIX 40 178 56
COLOUR_TEXT_REGION 40 178 56 178 50
HELIX 61 178 70
COLOUR_TEXT_REGION 61 178 70 178 50
HELIX 72 178 79
COLOUR_TEXT_REGION 72 178 79 178 50
HELIX 82 178 91
COLOUR_TEXT_REGION 82 178 91 178 50
HELIX 96 178 103
COLOUR_TEXT_REGION 96 178 103 178 50
HELIX 108 178 117
COLOUR_TEXT_REGION 108 178 117 178 50