QUERY           : GNTCGGETCSAAQVCLKGKCVCNEVHCRIRCKYGLKKDENGCEYPCSCAKA : QUERY 
UniRef90_O96858 : ---CGEKTCSPAQVCLNNECVCTAIRCMIFCPNGFKVDENGCEYPCTCAD- : UniRef90_O96858
UniRef90_P82107 : ---CGPVTCSGAQMCEVDKCVCSDLHCKVKCEHGFKKDDNGCEYACICADA : UniRef90_P82107
UniRef90_P81499 : ---CGGKTCSEAQVCKDGKCVCVIGQCRKYCPNGFKKDENGCTFPCTCA-- : UniRef90_P81499

                : 1---------11--------21--------31--------41-------- :
OrigSeq         : GNTCGGETCSAAQVCLKGKCVCNEVHCRIRCKYGLKKDENGCEYPCSCAKA : OrigSeq

Jnet            : -------------E-----EEE--EEEEEE---------------EE---- : Jnet
jhmm            : -------------------EE----EEEEE--------------------- : jhmm
jpssm           : ------------EEE----EEEEEEEEEEEE-----------EEEEEE--- : jpssm

Lupas 14        : --------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------- : Lupas 28

Jnet_25         : ---B----B--B-BB----BBB--B-B---B---B-----BB-B-B-B--- : Jnet_25
Jnet_5          : ---------------------B----B---B--------------B-B--- : Jnet_5
Jnet_0          : --------------------------------------------------- : Jnet_0
Jnet Rel        : 898877777652012157458301068997157753567775311021599 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.