SILENT_MODE
BLOCK_FILE jp_bc5abwn.concise.blc
MAX_NSEQ 694
MAX_INPUT_LEN 696
OUTPUT_FILE jp_bc5abwn.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 60 683   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 684 60 693 H SPACE
SUB_CHARS 1 684 60 693 E SPACE
SUB_CHARS 1 684 60 693 - SPACE
STRAND 4 687 10
COLOUR_TEXT_REGION 4 687 10 687 51
STRAND 33 687 37
COLOUR_TEXT_REGION 33 687 37 687 51
STRAND 53 687 57
COLOUR_TEXT_REGION 53 687 57 687 51
HELIX 17 687 25
COLOUR_TEXT_REGION 17 687 25 687 50
HELIX 41 687 52
COLOUR_TEXT_REGION 41 687 52 687 50
STRAND 3 692 9
COLOUR_TEXT_REGION 3 692 9 692 51
STRAND 33 692 37
COLOUR_TEXT_REGION 33 692 37 692 51
STRAND 53 692 58
COLOUR_TEXT_REGION 53 692 58 692 51
HELIX 17 692 25
COLOUR_TEXT_REGION 17 692 25 692 50
HELIX 41 692 50
COLOUR_TEXT_REGION 41 692 50 692 50
STRAND 4 693 10
COLOUR_TEXT_REGION 4 693 10 693 51
STRAND 33 693 37
COLOUR_TEXT_REGION 33 693 37 693 51
STRAND 54 693 57
COLOUR_TEXT_REGION 54 693 57 693 51
HELIX 17 693 26
COLOUR_TEXT_REGION 17 693 26 693 50
HELIX 41 693 53
COLOUR_TEXT_REGION 41 693 53 693 50