Filename Description -------- ----------- jp_i3tW1o_.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_i3tW1o_.als Alscript command file. Used to generate PS/PDF outputjp_i3tW1o_.blast.gz PSIBLAST output (compressed) jp_i3tW1o_.coils.csv The output from coils in CSV format jp_i3tW1o_.coilseq.lupas_14 The output from coils using a window length of 14 jp_i3tW1o_.coilseq.lupas_21 The output from coils using a window length of 21 jp_i3tW1o_.coilseq.lupas_28 The output from coils using a window length of 28 jp_i3tW1o_.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_i3tW1o_.concise.blc A BLC file of the prediction and alignment jp_i3tW1o_.concise.pdf A PDF file of the prediction and alignment jp_i3tW1o_.fasta Input query sequence in FASTA format jp_i3tW1o_.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_i3tW1o_.hmm The HHMer2 profile of the alignment jp_i3tW1o_.html A HTML file of the prediction and alignment jp_i3tW1o_.input Your raw input jp_i3tW1o_.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_i3tW1o_.jnet The output from Jnet jp_i3tW1o_.profile PSIBLAST profile jp_i3tW1o_.pssm PSIBLAST PSSM in a format for Jnet jp_i3tW1o_.seq Your sequence jp_i3tW1o_.simple.html The brief HTML output of the query sequence and prediction only jp_i3tW1o_.svg.html A Jalview generated SVG file with summary of the results.