Jpred secondary structure prediction results

QUERY               : MIKLRMPAGGERYIDGKSVYKLYLMIKQHMNGKYDVIKYNWCMRVSDAAYQKRRDKYFFQKLSEKYKLKELALIFISNLVANQDAWIGDISDADALVFYREYIGRLKQIKFKFEEDIRNIYYFSKKVEVSAFKEIFEYNPKVQSSYIFKLLQSNIISFETFILLDSFLNIIDKHDEQTDNLVWNNYSIKLKAYRKILNIDSQKAKNVFIETVKSCKY : QUERY 
UniRef90_I7LER9     : MIKIRMPPNASRTVNGKSVYLLYLMLKQHFVGKYDVIKYHWVMRISDQAYNKRRDKYFFEKLSDKYKLNELTLIFMSNLVANQDAWIGEISDADALIFYREYIGRLKRMSTQFEDDIKNIYYFAKKVEVESFGDIFNYNAKVDSSYIFKLLQSNIISFETFILLDSFMGIINKHDEQTNNLVWSTYSTKLSAYKKLLEIDSSKAKQLFMKTINECK- : UniRef90_I7LER9
UniRef90_E5EZ09     : MVRLQLPENSSRRIDGKSVYKLYLMLKNHFNGRYDVIKYRWQMKLSDKAYQNRKDRYFFERLSNKHNLNELCLIFISNLVANQNAWIGEISDSDALIFYREYIGKLSQVKTRFVDDVKNIYYFSKKLNVNSLNEIFVYNERIGSSYVFKLLQSDIISFETFILLDSFLDIIEKLDHH-DDIVWQSYSKRLHAYKKLLVIDGQAARSLFIETIKSCK- : UniRef90_E5EZ09
UniRef90_E5E4K7     : MVRLLLPPNNNIFIDGKSVYKLYLQLKNHFNGRYDVVKYDWNMNVSDKSYASRRDKFFFEKLSQKYRLKELCLIFISNLVANENAWIGEISDSDAVEFYKLYLARLKAVKSRFADDVKNIYYFAKKVEVSALKEIFVYNEQVQTSYIFKLLQSGIISFETFVMLDSFMNIVDNHD-QHDNIIWSSYSTRLKAYRKLFVVDSDQCKELFMETIKSVKY : UniRef90_E5E4K7
UniRef90_D9I6H5     : MLDIQLPQNNARRIDGKSVFKLYLQLKGHFNGKYDVVKYNWSMKLSDAAYNKRRDKMFFERLSSRHTLKDLCLIFISNLVANQDAWIGEISDADALIFYREYLGRLTQVQTRYQEDIRSIYYFSEKIGIKALRDIFVYNENISTSYVFKLLQNDIISFETFILLDSFLDIINNMDKH-DDIVWESYSKRLNGYRKILTVDSAKAKQLFVETIKSCK- : UniRef90_D9I6H5
UniRef90_A7XFL2     : MIRNRLPPDPDMRINAKSVYMLYCMMKAHMNGRYDCVKYNWRMRLSDAAFNKRRDKYYFAKLAEKYNLRELYFLFLSNLVANTDAWVGEITDVDAYGFYMEYIGKITDAATRFDDDIKSLVYFSEKRGV-TLKELITYNPATETSGIFKLLQNRIISFESFMLLDSFLNIIDEHDKVAKDLIWQTYSVKMKAYKKLLVIDAAKARALFVKVVKECK- : UniRef90_A7XFL2
UniRef90_I3WW08     : MVKLLLPPNNNIQIDGKSVYNLYLQLKNHFNGRRDVIKSDWRMKVSDSAYAKRKDKFFFEKLSKKFTLKELSLIFISNLVANQDAWIGDISDADAVNFYQTYLARLRQVKSRYDADVRNIYYFAKKVNVNSLNDIFCYNESTQMSYIFKLLQSGIISFETFIMLDSFLNIIEKHD-QYDNIIWSNYSVRLKAYRLLFIVDADECREAFKTSIKAAKY : UniRef90_I3WW08
UniRef90_A0A023W563 : MIKTRLPPNSGIKVTGKSVYQLYLILKHQMNGKYDAVKSGWRIKVSDAAYHKRRDKYFFEKLSSKYSLKELCYIFISNLVANQNAWIGEISDADALIFYREYIGRLQRMEQIFVDDIKNIFYFSQKKDVP-LGKIFEWNSVGNSSYIFKLLQTNIIGFETFLLLDSFLDVINKHNESAKELVWSSFETKLSGYKKLLDIDSAKARKLFIETIKSEK- : UniRef90_A0A023W563
UniRef90_Q56EE9     : MIALRYPPRPDRFISAKGAFMLYLMIKQHMAGKYDVIKYSWGMKVTDATFNKRKDKYFFEKLSNKFHLKDMVEIYLATFIENPSGWAGDLVSDEAMTAHRELLGRHLRFPNIYREDIKNIVYFAEKLDVP-LGKIMEYNTDKMTSPIFKLLQSGMISIETFLVIDSFLGILDKHDAMMSDIIWQNWHTKLSGYRKLVVINKDTAKRKFIEHVKAFK- : UniRef90_Q56EE9
UniRef90_E1A2K4     : MIELILPPKPKMTVNGISVYRLFLTLKNHFAGKYDIVKYQWPIRATEQSFVKHRSRAIFERLATKFTLGELAAIMTVNFAANPDAWGGDIANADAVTFYRTALGRYEQMSTVFKEEVEQMFYFARKKNMK-FKELI-YSTNGQ-PWIFKFVQTGTISYETMIILDALFNFVDSYDKLDDHVWANGYASRIKAYRMLTRINKEQAKACFIEIANQNK- : UniRef90_E1A2K4
UniRef90_M4SN45     : -------------MTGFEVYKMYLALKQHFTKKYDFYKYNGKVRANEKSFEERRDRYFFKKLATKYSGAKLLGYFVANFVNNPKGYLRSFSDD----IYTDWKIHQESFTYKFKQDVNTLLDQSTFPYQEAFDRIFKLEP-GKHPSVLRLYLSQDISLETLVVFEHCLGFVSDFDRVLTDPIWKETRLKILKYKPFLSIDCTEYKTTILDTIRT--- : UniRef90_M4SN45
UniRef90_M4SN83     : -------------MTGFEVYKMYLALKQHFTKDYDYVKYRGKVTASEKSFEERRDRYFFKKLATKYGDKELLNYFVANFIFNPKGYIRSFSDD----IYTRWKIHRESFSYKFKQDVNFLLEDVEPPYEQSFDSIF-NTCKGQHPIILKKYLSQDITLETLVVFEHCLGFVERFDSSLTDPIWKQTRNQILKYRPFVEIDCKKYKGVILDTIRS--- : UniRef90_M4SN83
UniRef90_R9TLL8     : -------------MTGFEVYKMYLALKQHFNRDYDYVKYRGKVSASEKSFEERRDRYFFKKLATKYEGQKMLDYFVANFMFDPKGYIKSFSDGN----YERWRVLRESFSYKFRQDVDLLLTYYESPYQDKFDKIFEVSEGV-HPPLLRHYLSGEISLETLVVFEKCLGYIKKFDNKLSDPIWKDVKRRVLKYEPFVNIDCQEYKGVILTVIRT--- : UniRef90_R9TLL8
UniRef90_M4SMC8     : -------------MTGFEVYKMYLALKQHFTKDYDYFKYRGKVRANEKSFEQRRDRYFFKKLATKYSDAELLSYFVANFVNDSKGYLQSFSKD----IYTDWKINQESFTYKFKQDVNTLLDDYQIPYDQAFEKLFVVEC--GHPPIIKHYLGGSISLETLVVFEKCLGFVSNFDKKLSDPIWKEVRTKTLKYKPFLTIDCQTYKRVLLETIRT--- : UniRef90_M4SMC8
UniRef90_E3SI13     : -------------------YKMYLALKQHFTPDYDFWKYNGKVRANEKSFEQRQDRYFFKKLATKYSGTKLLEYFVANFVSDPKGYLRSFSDD----TYTDWKIHQESFTYKFKQDVELLLDDSIFPYQEAFDRLFLVST-GKHPKILRQYLSGEISLETLVVFESCLGFVKNFDQVLTDPVWKDTRMRILKYKPFMKLDCSQYKSVILETIK---- : UniRef90_E3SI13
UniRef90_H8ZNL3     : -------------MTGFEVYKTYLALKQHFTKDYDYEKYRGKVRASEQSFEQRLDRYFFKKLAVKFKDHEIFDYFIANFLSNPRGYIKSFS----VENYTKWKIARESLTYKFKEDVNVLLDDLESPYDQSFEDIFKAS-KGNHPPLLKRYYANEVSLDTLVIFENCLGYIDNLSKILVDPIWEDTKMKVTKYKPFLQVDCKKYKGVILDVIHT--- : UniRef90_H8ZNL3
UniRef90_H8ZMX9     : -------------MTGFEVYKMYLALKNHFTPDYDYVKYNGKTRASEKSFEGRNDVYFFKKLAAKYSSEIMLNYFVANFINDSKGYLRNFSSD----IYTKWKTHQESFTYKFKQDIDLLLEDVGFPYDKNFDKLF-YAERGKHPILLKRYYSGEINLETLVVFDHCLQYVTRVDKVLTDPMWKDTKLKVQKYQPFLTIDCKKYKKIILETIRA--- : UniRef90_H8ZMX9
UniRef90_E3SQP2     : ---------------------MYLALKMHFTKDYDFVKYKGRVSASEKSFEERRDRYFFKKLATKYEGSKILDYLVANFMDNPKGYIKSFSDGN----YERWRINQESFSYKFKQDVHLLLTYFESPYQDKFDKIFELKE-GSHPPLLKHYLSGEITLETLVVFETCLGYVKSFDKKLTDPIWKETRRRVLKYQPFIKVDCSKYRQEILSVIRT--- : UniRef90_E3SQP2
UniRef90_M4SMV7     : -------------MNGFEVYQMYLSLKQHFTREYDYFRYGGRTRAKETTFLKRKDSYFFKKLATRYSKEELLLYLVSNFITDFGGYVRNFSDD----VYKKWKIKQESFTYKFKQDVEYLLDEVEAPYEDNFDKLFRTEP-GRHPILLKSFYANEISLETMAVFEHCLGYVKNFDSTITDPVWVETRLQIIKYIPFLNIECSKYRKVILETIE---- : UniRef90_M4SMV7
UniRef90_Q58LU6     : ---------------------MYLALKQHFTKKYDYHKYRGKVRASEDAFEQRHDRYFFKKLATKYSDQEIVDYFVANFVSDPKGYIKSFNDD----VYKTWKINQESFSYKFKEDVYALLDEYDYPYQDYFDRVFSIK-QGSHPKLLKFYLAGEISLETLVVFESCLGFVKDFDRVLTDPIWKEVKMKIIKYQPFIALDCNVYRGTILDTI----- : UniRef90_Q58LU6
UniRef90_I6XLX4     : MIKLILPPKPMITIDGRSCYRLYRSLKTQFNPKYQVVKGGWKLNTSEATYNKMARKHIYERLAKKYNLGTLCGIMITNLCSNPDMWGGEFGGEDAHDHYLKTTGKYERMSIVFKKEIQDLLRKSKSKGV-SFRDMIL--PTDGQPWLFKYVQQDVISYETMLLLDSLFNFIDSYDKLNDHVWQNGYSSRIKAYRSLVKIDKEKVRKHFKKIIEDYK- : UniRef90_I6XLX4
UniRef90_M1T2Q9     : -------------MTGFDAYKMYLAVRSHFTRDYDFFKFNGKTKASEAAFNKRKDIYTFKKLAAKKDANDILYYFVSNFIMGAS-YVRQFNDGN----YTKWKTNQESFTYKFKQDIDKLLDGIPQPYEESFDSLFK-AEKGKHPILIKEYYGNEISLETLVVLDYCLGFVDNFNKVLTDPVWNETSTLIVKYAPFLTIDCKKYKKVVLE------- : UniRef90_M1T2Q9
UniRef90_D9ICA6     : -MKFKTPFDANSRLKPIAVYKLYLVMKNHFAGRYDAIKYKWEIKITEQAFQKRKDRYFFTKLAERFTFKEIYLILLCNMVANPDFWVGDI-DEDTIVFYRQYIGKLRRIDNIFVDDVKNLYEFSRMKGIP-LSTVFQYSVKSSTSYISKLVQSGVISYESFLILDSFLDIINKHDEIATDFVWNEFSKKLNAYRKLVEISDEKYRNLMKQTL----- : UniRef90_D9ICA6
UniRef90_K7NRL5     : ---------ANSRLVPLSVYKLYLAMKTHFQGRFDVLQYNWQIKVSENAFNKRKDRYFFVKLAQRFTFKEIYFIFLSNFVANPDFWVGDV-DEDSIVFYRQYIGKLQRLDNVFVDDVKNVYEFAKMKEIPV-SLVFKYSEKSSTSYISKLVLSNVISYESFLIFDSFLGIINKHDQVADDIIWSDFSIKLKAYRKIFDLDIIKYRNLMKQTL----- : UniRef90_K7NRL5
UniRef90_E3SIP7     : -------------MMPFDAYKQYLSLKNHFTKKYDYHKYCGKIRATVKSFYKRKDRFWFEKLARNKSDREVIEFFVSNFVTCTDPWIGEMIREGE-GRYTSWKRRTQSLSYVFKQEMESVL--ADRDINSAF------ASTNGHSPMLKGYLSGDISLETMVICDKILGYRTDYDKTLTDPVWETVSMRMRKYSPFLNIDVFHYKNILKEMVH---- : UniRef90_E3SIP7
UniRef90_Q58MZ8     : -----------MKVTPFETYQAYLGMKSHFNPKYDFIKYGGKSRATMTSFNKRKDKYWFEKTSRKYSDQEVIDFLLSNFVNPQNLWIGEIINSGERT-YAEWKMRQQSLTYMFTEQSENLL------SENDLEKVF--NCSKGHPIVLKKYLGGEISLETLSILEKVFSFKGKFDKKLKDPVWETVSMKLKKYLPFLNINVFQFKKILRDIVNE--- : UniRef90_Q58MZ8
UniRef90_Q6WIE7     : ---------PRTWVNGYSVFRVYCAVKAHMSGKYDISKYKLGMKTPRSAFEKRSDKVFFERLAKRLTLNDCYQLLVSNLAANPNAISYEIAGADAHEFWLKHTGFLEIYSQHYKNELLSIFTLINK-ENKKFKDLFRGE---GHPVIMQLVLRNTISIETFVILNRLLNFVPVIDKTYDDIFWHEFKTRALAYDKLLKIDEELAKELFIQVKNQSK- : UniRef90_Q6WIE7
UniRef90_M4QQ30     : -----------MKVSPFDTYQHYLSLKNHFNPKYDFFRYGAKTRASVSSFNKRRDKYWFEKTSRKYNDEEVVKFLVSNFANPQNLWIGEIISSGERT-YQDWTKRQQSLTYLFKEQSNELL------SNNELETLF--SCSKGHPTILKRFLGGDISLETFVIYDRIFSFRKKFDKKLKDPVWETVSLKLQKYSPFLNIDVFKFKKILRDLVDE--- : UniRef90_M4QQ30
UniRef90_F5B3U4     : ---------------GFQVYKKYLAMKQHFNEKFDYFQYDGKVNAKETTYQDRSDFWFFETLARKHTPKETEEFMLATFANPSKVWIGEI-QRNGKANWLVWQKRQQSLQYTISQDLDRLVDYL-ATSGNSFNHLFK--TVGGHPALLKFYIKRQICVETLIVLDMILGFMVSWDRDLKDALWKSVSFKIRKYRPFLSINKEPYKKLLQK------- : UniRef90_F5B3U4
UniRef90_M4QDI6     : -------------MSGIEVYKMYLSLKLHFTTDFDYFKYGNAAKASQQSFDSRRDKFFFVKLSRTFKEDELREFFVANMIVEDKVYPATLVREGAK-NYQEYIKRKQSLAYNFKQDVSTLYEDSHF-----FDKLFII--DGMHPPLLKAHLGGRISIETLAIFNKIFNYVDNFDKIIKEIVWKPIRNRVLKYEPFISIDKGKYKSIIKQ------- : UniRef90_M4QDI6
UniRef90_S5MB15     : --------------DSFELFQYYLALKQHFNNEYDFFKYGGKVSVTPQALENRKDKSFFYSIAKKQRNPK--GYVFANVLHNPSVWIGDIAQDNSDKTFVGWERRMQSLSYTFREEIGNL-------NNDDFDSNFLCQE-GRHPPLLKVYLQKKLCLETLVILDMILSFSRYWDKQMKDPVWSEISKRIKKYKPFLEIDLPKFKGLLKD------- : UniRef90_S5MB15
UniRef90_E1XT47     : ----------MQYERAFNVYCIYMAIKLHFTTKFDYGLYGPMNNYKFETFYSKQGVKQFAKLARRFSQGEVVEYIIANFVKSPKTWVTTLLTRQAQENYNEYRRLYDNFSYNFLDHFERYMIPEIKERGVNFIQYIKGNGNG-HPPLLTDIIIKRYPIWFLVGLNKVVGFIHLYDTILKDIYWNSESFLLKKTNSVVPDENTEYKGKLRELI----- : UniRef90_E1XT47
UniRef90_M1IP32     : --------------DGYNIYKKYLAIKLHFSKDFDFFKYGGETKAKYETFIKRNDRYFFVKAARKY-GNDIVDYFVANFIGNKTDYIKDFSEDN----YLEWRKRIDGLTYYFKLDMEKLL----KKTDGNFDKIFKCY-RGQHPPLIKMYLAKKITLETLCILETMLNYTRQFDRDIDETVYPTIKRRMKKYQPFIKFNPTKMKLELRKML----- : UniRef90_M1IP32
UniRef90_M4M9T9     : ----------RQHASGYEVFKANLAIMQHFKKSFDFFK-GGRIKFSEEKYNARPDRVFYDKIAEEYPKGD----MLRFLAINQLNGCTHVSQYCGVAFWECYIGGLE---YHFEKDLKRMVDIAHDANV-SFKDLFK-SLTGGMPIAMQLSNGNHIKEETICLIDMACNIIKQMDNQVTDFVYPNLRMRIVKYSPWIPHDKREILEILKKYINQ--- : UniRef90_M4M9T9
UniRef90_K7YH19     : ----------MEYERAFHVYCVYMAVKLHFTPSFNYAEYGPMTNYKETFYAKEGQRKQFARLARRFDHDELENYLISNFVANPKTWVTHLLAKQGEHNYQQWRQLYENFTYNFTRNCENLFPLIRAHGVTFMEYLKPVSADVHT-KLLEDIITKKLPVWFLIAIHKVTGFMDAYDETYDDIYWEAEAKFLRKVDQVVDEDRTGTRKKLRELI----- : UniRef90_K7YH19
UniRef90_E1A196     : MIALRYPPRPDRFISAKGAFMLYLMMKQHMAGKYDIIKYSWNMKVTDAAFNKRRDKYFFDKMSDKFHLKDLTEIFLATFLENSNGWAGDLVSEDAMAAHRELLGRYIRFPEIYREDLKNLVLFFQ-------------------------------------------------------------------------------------------- : UniRef90_E1A196
UniRef90_S6CFC2     : ----------MEYERAFNVYCIFMAIKLHFTTKYDYGLYGPMSNYKETFFAKEGMRKQFARLARRFSQGEVVEYIIANFIKSPKTWVTTLLTRQAQENYNEYRKLYDNFTYHFLDFFEKNMIPEIVGRGLTFLDYLKG-DGQNHPALLTDIIMKKYPIWFLVGLNKITGFITFYDKLLKDIYWNSEAFLLKKTDAVVNENTDYARNKFREMI----- : UniRef90_S6CFC2
UniRef90_E5DRN9     : --------------------------------------------------------------------------MITNFSSNPDMWGGDIANEDAHDHYLKTIGKYERMKSVFKSEVEGLLRKSKSKGI-TFRQLL--SPNDGQPWIFKYVQQDVISYETMLLLDSIFNFIDSYDDLNDHVWMNGYSSRIKAYRSLVKIDKEKVMQNFKKIIEDYK- : UniRef90_E5DRN9

                    : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211---- :
OrigSeq             : MIKLRMPAGGERYIDGKSVYKLYLMIKQHMNGKYDVIKYNWCMRVSDAAYQKRRDKYFFQKLSEKYKLKELALIFISNLVANQDAWIGDISDADALVFYREYIGRLKQIKFKFEEDIRNIYYFSKKVEVSAFKEIFEYNPKVQSSYIFKLLQSNIISFETFILLDSFLNIIDKHDEQTDNLVWNNYSIKLKAYRKILNIDSQKAKNVFIETVKSCKY : OrigSeq

Jnet                : ---------------HHHHHHHHHHHHH-----EEEEEE-------HHHHHH----EHHHHHHH-----HHHHHHHHHH--------EEH----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---------EEEE------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHH--------HHHHHHHHHHHHHH--- : Jnet
jhmm                : ---------------HHHHHHHHHHHHH-----EEEEEE-------HHHHHH---EEEEHHHHH------HHHHHHHH--------HHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------HHHEEEEE-----HHHHHHHH-----HHHHHHHHHH--HHHHHH---------HHHHHHHH---HH---HHHHHHHHHHHHHH--- : jhmm
jpssm               : ---EE----------HHHHHHHHHHHHH------EEEEE---EE--HHHHHH----HHHHHHHH-----HHHHHHHHHHH------EEEE----HHHHHHHHHHHHH---HHHHHHHHHHHHHH----------EEE---------EEEHH------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHH--------HHHHHHHHHHHHHH--- : jpssm

Lupas 14            : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21            : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28            : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25             : -B---BB------B-BBBBBBBBBBBB-BB---BBBBBB---B-B---BB-------BB--BB--B----BBBBBBBBBBBB---BB--BB---B--BB--B------B---B---B--BB--B----B--B--BB-BB----BBBBBBBBB---BBBBBBBBBBBBBBBB--B---B--BBB--B---B--B--BB-B----BB-BBB-BB--B-- : Jnet_25
Jnet_5              : -------------B-B--BB-BBB-B---------B----------------------B--BB-------B--BBBBBBB------B--B--------B--B----------B---B--B---B-------B---B----------BB-----------BBBBB--B--BB------------------B-------------B---B---B----- : Jnet_5
Jnet_0              : ------------------B------------------------------------------B-----------BB-B---------B-----------------------------B------------------------------B-----------BB------------------------------------------B---B--------- : Jnet_0
Jnet Rel            : 8513237888761026899999999885168880178744753313567774377210287632168860458998883147887400001465178999999987418036778876567751067777621114331778770344412167774689999999821787688212688860256666405783266378999999999875289 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.