SILENT_MODE
BLOCK_FILE jp_QU9nr0f.concise.blc
MAX_NSEQ 53
MAX_INPUT_LEN 55
OUTPUT_FILE jp_QU9nr0f.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 95 42   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 43 95 52 H SPACE
SUB_CHARS 1 43 95 52 E SPACE
SUB_CHARS 1 43 95 52 - SPACE
STRAND 9 46 10
COLOUR_TEXT_REGION 9 46 10 46 51
STRAND 20 46 26
COLOUR_TEXT_REGION 20 46 26 46 51
STRAND 31 46 35
COLOUR_TEXT_REGION 31 46 35 46 51
STRAND 42 46 49
COLOUR_TEXT_REGION 42 46 49 46 51
STRAND 58 46 63
COLOUR_TEXT_REGION 58 46 63 46 51
STRAND 93 46 94
COLOUR_TEXT_REGION 93 46 94 46 51
HELIX 79 46 88
COLOUR_TEXT_REGION 79 46 88 46 50
STRAND 9 51 11
COLOUR_TEXT_REGION 9 51 11 51 51
STRAND 17 51 26
COLOUR_TEXT_REGION 17 51 26 51 51
STRAND 31 51 35
COLOUR_TEXT_REGION 31 51 35 51 51
STRAND 42 51 48
COLOUR_TEXT_REGION 42 51 48 51 51
STRAND 59 51 63
COLOUR_TEXT_REGION 59 51 63 51 51
STRAND 71 51 72
COLOUR_TEXT_REGION 71 51 72 51 51
HELIX 78 51 88
COLOUR_TEXT_REGION 78 51 88 51 50
STRAND 32 52 35
COLOUR_TEXT_REGION 32 52 35 52 51
STRAND 42 52 50
COLOUR_TEXT_REGION 42 52 50 52 51
STRAND 57 52 63
COLOUR_TEXT_REGION 57 52 63 52 51
STRAND 93 52 94
COLOUR_TEXT_REGION 93 52 94 52 51
HELIX 5 52 8
COLOUR_TEXT_REGION 5 52 8 52 50
HELIX 17 52 17
COLOUR_TEXT_REGION 17 52 17 52 50
HELIX 20 52 21
COLOUR_TEXT_REGION 20 52 21 52 50
HELIX 79 52 88
COLOUR_TEXT_REGION 79 52 88 52 50