QUERY : SDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV : QUERY
UniRef90_P36275 : NDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESV-DEHKKANAFAGSALSH- : UniRef90_P36275
UniRef90_L8BIF2 : SDPAHTAYGAGALATETPAMTPLMLEATAGKLVAWDGEHAGAACGILAVAADQNSTELTFYKSGSFRVEDIHWPDAVTDDGIKRNAFAGTAISIV : UniRef90_L8BIF2
UniRef90_B6XE20 : SDTAHTAQGVNGIATATPELTPLMLDDATGKLVVWDGQKAGTAVGILALALTGNEAHLTYYKSGTFATGALHWPDSV-DAVKKANAFIGCAISH- : UniRef90_B6XE20
UniRef90_F4T757 : NDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGTAVGVLALELTGAEPGLTYYKTGTFATEALKWPASV-DEVKKANAFAGSAISHV : UniRef90_F4T757
UniRef90_UPI0003606453 : SDAAHTANGISGLTAATPALTPLMLKEDTNKLVAWDGEKAGTAVAILALAIDGPQPKITYYKSGTFRVEDVQWPEAAATDELKFNAFAGTAISV- : UniRef90_UPI0003606453
UniRef90_R8AR52 : SDPVYTARGAADLSAATPALTPLMLNE-TGKLVAWDGTKAGTAVGLLALSVADSATQVTYFKSGSWRLEDIQWPHGVSDEHLKRNAFVGTALSVV : UniRef90_R8AR52
UniRef90_D4F562 : -DPAHTAVGQSGISEAVPAMTPLMLDSSTGKLVKWDGQNAGTAVGVLAIALAGSEQTLTYYKSGTFATDALVWPSSV-DAVKKANAFVGSALSHI : UniRef90_D4F562
UniRef90_S2EIT0 : NDPAHTATGACAITTATPVLTPLMLDGTTGSLVAWDGENAGTAVGVLALPLEGGETTLTYWKSGTFATEALEWPETV-DPIKKVNAFAGSAISH- : UniRef90_S2EIT0
UniRef90_C1HK30 : -------------------MTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETVLTYYKSGTFATEAIRWPDSV-DEHKKANAFAGTALSH- : UniRef90_C1HK30
UniRef90_A0A026RTY1 : TEALVTTLGFSANKGVIPAFTPLMQEDATGALVVWDGSSVGKAVYVSAVQIDTAKTQAQVYKTGVLNVDALNWPESVKELSAKVAAFVGSGISV- : UniRef90_A0A026RTY1
UniRef90_U0M3R3 : ------------MSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV : UniRef90_U0M3R3
UniRef90_H5IXS3 : NDPAHTATGSSGISSATPALTPLMLDEASGKLVVWDGQKAGSAVGILVLPLEGTETVLTYYKSGTLR---------------------------- : UniRef90_H5IXS3
UniRef90_H1C247 : ---VHFAADAGAI----PEFTPLMM-TENGEFKAWDGQESGKAIYLTSYPLDTAKQKAQCYKTGIFNIAAVNWPESVTTDVKKCAAFAGSGISV- : UniRef90_H1C247
UniRef90_E7T2X5 : -------------------IFPLML-ADNGEFKAWDGQESGKAVYLTAYPVDTSKQKAQCYKTGIFNIAAVNWPESVDTDAKKCAAFAGSGVSV- : UniRef90_E7T2X5
UniRef90_K8ZQ75 : ---VSTLGIFAGGKGVIPALTPLMQDATNGALVVWDGAHAGQAVYVSCFSVDTASTQAQVYKTGVLNVDALNWPEDVTTLSAKVSAFVGSGISV- : UniRef90_K8ZQ75
UniRef90_A0A024KU75 : ---LVSTLACFASAGEIKARTPLMQNGA-GLMVEWDGTPGKAVYLTISDINTATKNRAQVYKCGVFNIDEINWPDTADTFEKKVSAFVGSGISV- : UniRef90_A0A024KU75
UniRef90_A7MWA9 : ---PVTARATIKTGVSFPARTPLMADTDAATLVEWDGTPGKAAISARDVTNTGSDQESTVYLQGGFRIGFVNWPDAVTTNKQKRAAFLGSPVFV- : UniRef90_A7MWA9
UniRef90_X0P672 : -DPVVTAIGHFSGGVDALRLTPLMVDTNTGCFKIWDGTV-GKAVGLTATAVNTSSSDQTYYKSGSFRSTAINW-GTVTDTNKQKSAFAGTPISV- : UniRef90_X0P672
UniRef90_S4YSA9 : ----------VSGKGVVEPLTPLMQDATTGALLLWDGEKPGQAVYLSALTVDTARTVAQVYKCGVFNIDAVKWPESVTTQVAKIGAFVGSGISV- : UniRef90_S4YSA9
UniRef90_F2P5K3 : SEPLVTGRIFVAAGETIQRLTPIMLKTISNVIVPWDGSP-GTAIGVLATQVPASDQLVSYYKGGCMRISALNWPESVTDVKDKYAAFAGCALTV- : UniRef90_F2P5K3
UniRef90_UPI00046F925B : NEPLKTGRAMVAAGQTFARLTPLMLQQDSGVLVAWDGTPGLAAVSAKAVEALAADTLVPYYKTGCFRLNVVQWP-AGLTEAEQRAAFIGTPISV- : UniRef90_UPI00046F925B
UniRef90_H4PJH4 : SDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGT------------------------------ : UniRef90_H4PJH4
UniRef90_U5SHE5 : -DLVVTTVGHFQGGINVPRLTPIMLDATVGTFKVWDGSV-GKAIGLTATAVNTGSSSASYYKSGSFRYTAINW-GTVTDVAKRKSAFAGTPISV- : UniRef90_U5SHE5
UniRef90_U3HC51 : SAPIHTTQGTIASGQNVGQRVPLGQILATGLLVKWPGASDGKAVYLSSYPVNATSKKAQVISAGTFNPELVDWPVG-TTEAQKLAAFVGTPISL- : UniRef90_U3HC51
UniRef90_UPI000255A5F5 : SDQPATTSGTYATGQTIPARTPLGQVTASGEFVAWDAATDGSEVAVRMSAVDIDTTKGPMIKGGTYNPELVNWPDGTTD-VEKALAFVGTPISL- : UniRef90_UPI000255A5F5
UniRef90_B3XBL4 : ----------------------------------WDGTTDGAAVGILAVAADQTSTTLTFYKSGSFRYEDVLWPEAASDETKKRTAFAGTAISIV : UniRef90_B3XBL4
UniRef90_D6ILH9 : SDPAHTATAPGGLSAKAPAMTPLMLDTSTRKLVVWDGTTDGAAVGILALLLT------------------------------------------- : UniRef90_D6ILH9
UniRef90_E8IVV6 : NDPAHTATGSSGISSATPALTPLMLDEATGKLVVWDGQKAGSAVGILV----------------------------------------------- : UniRef90_E8IVV6
UniRef90_H5KTL5 : TEALVTTLGFSANKGVIPAFTPLMQEDATGALVVWDGTSAGKAVYVSAVQIDT------------------------------------------ : UniRef90_H5KTL5
UniRef90_K6ZLI2 : SDEIATTSVTILSGEDLAAAVPIGQVTLSGKFVECDGSQTPKYITAQAIDATGGDVKAQVYKSGTFDTAQIAF-HANFTAAEKLLAFVGTPISL- : UniRef90_K6ZLI2
UniRef90_F6DZ45 : ---------TLAASQTIAAMTPVGLDGSGNLVPAVSGTT--QAIGILMRPITSGASPIQVLRQGCLNMDLIAWPASYDTDEKKLEAFRGAP---- : UniRef90_F6DZ45
UniRef90_M4R165 : -----------------------------NKLVA--ATDTIQAIGVMTQAVTGNSTTVPVFLSGCFNPAMLVWDDSFADMASKLNAFMGAP---- : UniRef90_M4R165
UniRef90_G8DCP0 : --PALFSTDTVLTTQTLEALTVVGFDGA-GKVVQANNTTV-AAVGILVYATDTTDAVASIYRGGCFNPDLLVWHSGYATDAHKAKAFEGAA---- : UniRef90_G8DCP0
UniRef90_UPI0004799E3A : --PIHTQPVTIASGEELEARSVLGQVTADGTFKASDGSETPKAILAYAVDASGGAVEAAVYMSGSFDPDKLVY-GTGHDAESVAQALLGSPIFL- : UniRef90_UPI0004799E3A
UniRef90_X6ZSY8 : ------------------------------EIVKFDPATDGKAAGILLNSVDTSATGSTFYTGGDFNHEVLIWPATVTTLAQRRAVFATTA---- : UniRef90_X6ZSY8
UniRef90_U7GDW1 : -----FATGTIKASEDIKQFHVVGLDASDLIVPAVEGVT--QAIGIASQAVIGNTTTAPIIYSGCFNPDALVWDASYDTDAKKEAAFRGAP---- : UniRef90_U7GDW1
UniRef90_S4TN34 : ------------------AIYQVIAKNAAGAMVPYDPTTAATAIGIAAQPAK-SGQNVPYYIGGVFNHAALGWPATVDTLVKRQAVFDRTNIHI- : UniRef90_S4TN34
UniRef90_Q6UYI2 : -----------------------------GLLVPWPAASDGKAYGISAQPKAAGAATVPVFVGGVFNHAVLVWDAAADTFEERQAAFAGTPVFI- : UniRef90_Q6UYI2
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--- :
OrigSeq : SDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV : OrigSeq
Jnet : --------EE---------EEEEEEE----EEEEE------EEEEEEEE--------EEEEEE---------------HHHHHHHHHH----EE- : Jnet
jhmm : --------EEE-----EEEEEEEEEE----EEEEE------EEEEEEE----------EEEEE-------EE-----HHHHHHHHHHH----EEE : jhmm
jpssm : ----HHHH--------H--HH----------EEEE------EEEEEEEEE------EEEEEEE---------------HHHHHHHHHH----EE- : jpssm
Lupas 14 : ----------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ----------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ----------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ---BBBB-BBB-B---B--BBBBBB----BBBBBB-B---B-BBBBBBB-B-B----BBBBBBBBBBB-BB-B---B-----BB-BBBBBBBBB- : Jnet_25
Jnet_5 : ------B---------------BB-------B----------BBBB-B---------B-BB-BB-B----B--------------BB--B----- : Jnet_5
Jnet_0 : -------------------------------B-----------B-B-------------B-------------------------B--------- : Jnet_0
Jnet Rel : 99723122011312310110222231136635886278885378888831478874204776146777672377765078999988614886103 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.