SILENT_MODE BLOCK_FILE jp_Fvulwwh.concise.blc MAX_NSEQ 115 MAX_INPUT_LEN 117 OUTPUT_FILE jp_Fvulwwh.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 89 104 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 105 89 114 H SPACE SUB_CHARS 1 105 89 114 E SPACE SUB_CHARS 1 105 89 114 - SPACE STRAND 48 108 51 COLOUR_TEXT_REGION 48 108 51 108 51 HELIX 4 108 11 COLOUR_TEXT_REGION 4 108 11 108 50 HELIX 28 108 36 COLOUR_TEXT_REGION 28 108 36 108 50 HELIX 42 108 47 COLOUR_TEXT_REGION 42 108 47 108 50 HELIX 56 108 67 COLOUR_TEXT_REGION 56 108 67 108 50 HELIX 71 108 87 COLOUR_TEXT_REGION 71 108 87 108 50 HELIX 3 113 11 COLOUR_TEXT_REGION 3 113 11 113 50 HELIX 28 113 36 COLOUR_TEXT_REGION 28 113 36 113 50 HELIX 41 113 50 COLOUR_TEXT_REGION 41 113 50 113 50 HELIX 56 113 67 COLOUR_TEXT_REGION 56 113 67 113 50 HELIX 73 113 87 COLOUR_TEXT_REGION 73 113 87 113 50 STRAND 48 114 51 COLOUR_TEXT_REGION 48 114 51 114 51 HELIX 5 114 12 COLOUR_TEXT_REGION 5 114 12 114 50 HELIX 28 114 36 COLOUR_TEXT_REGION 28 114 36 114 50 HELIX 56 114 68 COLOUR_TEXT_REGION 56 114 68 114 50 HELIX 71 114 87 COLOUR_TEXT_REGION 71 114 87 114 50