SILENT_MODE
BLOCK_FILE jp_NM3scwv.concise.blc
MAX_NSEQ 348
MAX_INPUT_LEN 350
OUTPUT_FILE jp_NM3scwv.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 223 337   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 338 223 347 H SPACE
SUB_CHARS 1 338 223 347 E SPACE
SUB_CHARS 1 338 223 347 - SPACE
STRAND 123 341 123
COLOUR_TEXT_REGION 123 341 123 341 51
HELIX 3 341 13
COLOUR_TEXT_REGION 3 341 13 341 50
HELIX 21 341 30
COLOUR_TEXT_REGION 21 341 30 341 50
HELIX 38 341 87
COLOUR_TEXT_REGION 38 341 87 341 50
HELIX 92 341 115
COLOUR_TEXT_REGION 92 341 115 341 50
HELIX 124 341 148
COLOUR_TEXT_REGION 124 341 148 341 50
HELIX 155 341 186
COLOUR_TEXT_REGION 155 341 186 341 50
HELIX 194 341 215
COLOUR_TEXT_REGION 194 341 215 341 50
HELIX 3 346 13
COLOUR_TEXT_REGION 3 346 13 346 50
HELIX 21 346 30
COLOUR_TEXT_REGION 21 346 30 346 50
HELIX 38 346 87
COLOUR_TEXT_REGION 38 346 87 346 50
HELIX 92 346 115
COLOUR_TEXT_REGION 92 346 115 346 50
HELIX 123 346 146
COLOUR_TEXT_REGION 123 346 146 346 50
HELIX 154 346 186
COLOUR_TEXT_REGION 154 346 186 346 50
HELIX 194 346 215
COLOUR_TEXT_REGION 194 346 215 346 50
STRAND 122 347 123
COLOUR_TEXT_REGION 122 347 123 347 51
HELIX 3 347 14
COLOUR_TEXT_REGION 3 347 14 347 50
HELIX 23 347 30
COLOUR_TEXT_REGION 23 347 30 347 50
HELIX 38 347 87
COLOUR_TEXT_REGION 38 347 87 347 50
HELIX 92 347 113
COLOUR_TEXT_REGION 92 347 113 347 50
HELIX 124 347 148
COLOUR_TEXT_REGION 124 347 148 347 50
HELIX 158 347 186
COLOUR_TEXT_REGION 158 347 186 347 50
HELIX 194 347 215
COLOUR_TEXT_REGION 194 347 215 347 50