SILENT_MODE BLOCK_FILE jp_ESNMAG7.concise.blc MAX_NSEQ 67 MAX_INPUT_LEN 69 OUTPUT_FILE jp_ESNMAG7.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 197 56 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 57 197 66 H SPACE SUB_CHARS 1 57 197 66 E SPACE SUB_CHARS 1 57 197 66 - SPACE HELIX 3 60 43 COLOUR_TEXT_REGION 3 60 43 60 50 HELIX 52 60 63 COLOUR_TEXT_REGION 52 60 63 60 50 HELIX 67 60 108 COLOUR_TEXT_REGION 67 60 108 60 50 HELIX 110 60 121 COLOUR_TEXT_REGION 110 60 121 60 50 HELIX 127 60 182 COLOUR_TEXT_REGION 127 60 182 60 50 HELIX 185 60 194 COLOUR_TEXT_REGION 185 60 194 60 50 HELIX 3 65 43 COLOUR_TEXT_REGION 3 65 43 65 50 HELIX 52 65 63 COLOUR_TEXT_REGION 52 65 63 65 50 HELIX 66 65 97 COLOUR_TEXT_REGION 66 65 97 65 50 HELIX 100 65 108 COLOUR_TEXT_REGION 100 65 108 65 50 HELIX 110 65 121 COLOUR_TEXT_REGION 110 65 121 65 50 HELIX 127 65 182 COLOUR_TEXT_REGION 127 65 182 65 50 HELIX 185 65 194 COLOUR_TEXT_REGION 185 65 194 65 50 HELIX 2 66 42 COLOUR_TEXT_REGION 2 66 42 66 50 HELIX 52 66 63 COLOUR_TEXT_REGION 52 66 63 66 50 HELIX 71 66 71 COLOUR_TEXT_REGION 71 66 71 66 50 HELIX 75 66 122 COLOUR_TEXT_REGION 75 66 122 66 50 HELIX 128 66 138 COLOUR_TEXT_REGION 128 66 138 66 50 HELIX 144 66 160 COLOUR_TEXT_REGION 144 66 160 66 50 HELIX 165 66 181 COLOUR_TEXT_REGION 165 66 181 66 50 HELIX 185 66 194 COLOUR_TEXT_REGION 185 66 194 66 50