Jpred secondary structure prediction results

QUERY           : SFSSSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDESEEVVKGDPTTYYTVVGGGLTMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELEVKDGFKYVDGSASEDAADDTSLINSAKLIACV : QUERY 
UniRef90_P25946 : TFATKGICKQDEDVRYMGIDVVVKVTK--KTSGSDTVCQALRTTFEAAHKGEGFVIG--STYYTIVGGGLSVTFGFTGCPTVKSVSEYAKGRIVFIRLSSDAPWRDTNPMSINRTEALALLEKCETSIDIKCSNETVSETTYGLASLAPHIT-QATERGNIIGSTLVDTDCVENLDVTVHLGEMCRKTSDLSKRDSLKVKNG---ELLDDDTFSIHTPKLKAC- : UniRef90_P25946
UniRef90_T2ASJ3 : --ATKGICKRDADAHHMGLDV--VVKVTKKTTGRDTVCQGLRTTTEYADGSEEEYENDESTYYTVVGAGLSATFGFTGCPTIKAVSEYSKGHTVFIRLSSEAPWRATDPVTMNRTEALALLEECNVSVDIQCSNETVRETTYGLAGLAPRIT-QAADRSHIIGSTLVDTSCVKSLDITVHMGEMCRKTSDLSARDSLKVKNGKLLE---EDILSIRTPKLKAC- : UniRef90_T2ASJ3
UniRef90_Q9PX83 : TLATKGICRQGEDVRYMGIDVVAKITKR--TTGSDTPCQGLRTTIESEDENEDFVIG--STYHTIVGGGLSVTFGFTGCPTVKAISEHVKGRHVYVRLSSDAPWRDTNPVSMNRTEALALLDTCEVSVDIKCSRVNVTETTYGTAALVPRIT-QATRRSHIIGSTLVDTECVKSLDITVQVGEMCKRTSDLSARDSLKVKNGKLLE---DDILVLRTPTLKAC- : UniRef90_Q9PX83
UniRef90_G0XVL2 : ----------------------------------------------------------------------MMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKT-PVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEFSVRIGDMCKESSDLEVKDGFKYVDGSASEGATDDTSLIDSTKLKACV : UniRef90_G0XVL2
UniRef90_Q775N8 : ----KSVCDSD-NKEYMGIEVYVEATLDE--PLRQTTCES--EIHKYGA--------------SVSDGGLNISVDLLNCVNLNTVGVYTNRDTVYAKFASLDPWTMEPINSMTHDDLVKLTEECIVDIYLKCEVDKTKDFMKTNGNRLKPRDFKTVPPSNI-GSIIELQSCVNDVTVYVKIYDACKQHSIPTLRDYFTTKNG---------------------- : UniRef90_Q775N8
UniRef90_H6TAF7 : ----------DTKNVFMGMDLRIFAKVNKSTST-----------------CSDFDINKNSAY--VLGGGLKINTTLYDCPPVSKISEVYGDNILNVEFKSVNPVTDRDTHFVSREDVKDLEKTCKVVVSMSCSFEEIASPIYNEILTVLSRTKPSINVSDILTLDI-DKSCIKEVAASLRINDLCKRYPESSYVQEVSYPESSKFEDFEKTSTS---------- : UniRef90_H6TAF7
UniRef90_H6TAG4 : ----------DTENVFMGMYLNIFAKVNKYTPR----CTSL-------------DIKKDNAY--VVGGGVIINTTLQDCPPVSTVAEVYDDSILNVIFSTVNPITDKDTNFITKDESKNIPKKCKVFVSMKCKQDEHFSNVDNEILATFNRNKAPIKVNDILTLDI-DKSCVQEVVSRLRINDLCKRYPESSYVQEVSYPESSKFEDFEKNT------------ : UniRef90_H6TAG4
UniRef90_Q1HTQ4 : ------------------IGIMMSVHIARKTPAKHGVC-------------EESIHGDDEAY--VVGADLNVSLALKRCDTRLAIAMAPNPKTLDVAFVSEMPWYDQNPPAVYIEEAVKTLKKCFARLSIMCINREVDHTMFNYLPLGASLEEQRLKRGELGGDGLQD-------------------------------------------------------- : UniRef90_Q1HTQ4
UniRef90_M9XBH9 : -------CTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEITESESDPEVESEDDPTTYYSIIGGGLRMNFGFTKCPQIKSISESADGNTVNARLSSVSQDKVRTLP------------------------------------------------------------------------------------------------------------------ : UniRef90_M9XBH9

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221- :
OrigSeq         : SFSSSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDESEEVVKGDPTTYYTVVGGGLTMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELEVKDGFKYVDGSASEDAADDTSLINSAKLIACV : OrigSeq

Jnet            : --------------EEEEEEEEEEEEE---------HHHHHHHHHH---------------EEEEE---EEEEE---------EEEEE----EEEEEEEE-------------HHHHHHHHH--EEEEEEEEEEE-------------------------------HHHHHHHEEEEEEEEHHH---------EEEEEE--------------E---------- : Jnet
jhmm            : ---------------EEEEEEEEEEEE---------HHHHHHHHHH---------------EEEEE---EEEEE---------EEEEE----EEEEEEEE-------------HHHHHHHHH--HEEEEEEEEEE-------------------------------HHHH--EEEEEEEEE--H----------EEEEE------E------EEE--------- : jhmm
jpssm           : -------------EEEEEEEEEEEEEEE-------------EEEEE---------------EEEEE----EEEE---------EEEEE----EEEEEEEE-------------HHHHHH--HHEEEEEEEEEEEEE-----------------------------HHHHHHH-HEEEEEEHHHH--------EEEEEEE--------------------EEE-- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ------BB-------BBBBBBBB-B-B---B-----BB-BB--BB---------------BBBBBBBBBB-B-B-B--B--B-BBBBB----BBBBBBB---BB----B-BBB---BB-BB--B-B-B-B-B----B---B--BB-BBB-B----B----BBB-BB-B--BB--B-B-B-B--BB--B----B---B-B--B--B--B---BBBB-B--B--B- : Jnet_25
Jnet_5          : ----------------B-B-B-B-B------------B--B--B-----------------B--BB---B-B-B----------B--------B-B-B-------------B----B------B---B------------B-----------------------------BB--B-B-B-B---B-----------------------------B--------- : Jnet_5
Jnet_0          : ----------------------B-B--------------------------------------------------------------------B-B------------------------------------------------------------------------------------B------------------------------------------- : Jnet_0
Jnet Rel        : 99886677777622287268889998715777777602223322113677776535677735898547816760257777750568854886589998853677777777652677641431102788898875611577766666666667765467777765305555110313566320120477887522577615677773777677001666531017 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.